Conserved Protein Domain Family
NS3_envE
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pfam02723: NS3_envE (this model, PSSM-Id:397025 is obsolete and has been replaced by 460662)
Non-structural protein NS3/Small envelope protein E
This is a family of small non-structural proteins, well conserved among Coronavirus strains. This protein is also found in murine hepatitis virus as small envelope protein E.
Links
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Statistics
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PSSM-Id: 397025
Aligned: 27 rows
Threshold Bit Score: 54.1497
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q66193    2 FNLFLTDTVwYVGQIIFIFAVCLMVTIIVVAFLASIKLCIQLCGLCNTLVLSPSIYLYDrskqLYKYYN-EEMRLPlleV 80  Murine hepatitis virus
Q5MQC8    2 VDLFFNDTAwYIGQILVLVLFCLISLIFVVAFLATIKLCMQLCGFCNFFIISPSAYVYKrgmqLYKSYSeQVIP-Pt-sD 79  Human coronavirus HK...
BAS18868  4 ADFYLADTVwYVGQIIFIVAICLLVIIVVVAFLATFKLCIQLCGMCNTLVLSPSIYVFNrgrqFYELYN-QVKP-PvlnV 81  Equine coronavirus
AJA91210  2 VELSLTDTVwYVGQIILIVAICLLVILIVVAALATFKLCIQLCGMCNTLVVSPSIYVYNrgrqFYKFYS-DAKP-PvldL 79  Betacoronavirus HKU24
Q0ZME5    2 VDVFFTDTAwYVGQIFFLVLSCVIFLIFVVALLATIKLCIQICGFCNIFIISPSAYVYNrgrqLYKSYSeHVIPSTl--D 79  Human coronavirus HK...
AIA62348  2 LPFVQEQIGaFIVNFFILSVVCAVTLVVCLAILTAIRLCVQCVSGCHTLVFLPAVHIYNtgraAYVKFQeSHPPYPp--E 79  BtPa-BetaCoV/GD2013
AIA62357  2 LPFVHEQIGtIIVNFFILTVVCAITLVVCLAILTAIRLCVQCASGVNTLLFVPAFYIYNtgrnAYFKFQeNRPPFPp--E 79  BtTp-BetaCoV/GX2012
AHY61342  2 LPFVQEQIGsFIVNFFIFTVACAIILLVCMAFLTATRLCVQCAIGLNALLVQPAIYVYNtgrsVYVKFQeSKPPLPp--D 79  BtVs-BetaCoV/SC2013
AGX27805  2 LPFVHQQLGsFIVNFFIFTVACAVILLVSMAILTACRLCVQCLTGVNTLLVQPAIYVYNmghsVYVKYQnSKPELPp--A 79  Betacoronavirus Erin...
AKZ19078  2 YSFVSEETGtLIVNSVLLFLAFVVFLLVTLAILTALRLCAYCCNIVNVSLVKPTVYVYS----RVKNLN-SSEGVP---D 73  Bat SARS-like corona...

Q66193   81 DDI 83  Murine hepatitis virus
Q5MQC8   80 YLI 82  Human coronavirus HKU1 (isolate N1)
BAS18868 82 DDV 84  Equine coronavirus
AJA91210 80 DDV 82  Betacoronavirus HKU24
Q0ZME5   80 DLI 82  Human coronavirus HKU1 (isolate N5)
AIA62348 80 DWV 82  BtPa-BetaCoV/GD2013
AIA62357 80 DWV 82  BtTp-BetaCoV/GX2012
AHY61342 80 EWV 82  BtVs-BetaCoV/SC2013
AGX27805 80 DWF 82  Betacoronavirus Erinaceus/VMC/DEU/2012
AKZ19078 74 LLV 76  Bat SARS-like coronavirus YNLF_31C
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