Conserved Protein Domain Family
betaCoV_M

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cd21565: betaCoV_M 
betacoronavirus Membrane (or Matrix) protein
This subfamily contains the Membrane (M) protein of betacoronaviruses including the M proteins from three highly pathogenic human coronaviruses (CoVs) such as Middle East respiratory syndrome (MERS)-related CoV, severe acute respiratory syndrome (SARS) CoV, and SARS-CoV-2, also known as 2019 novel CoV (2019-nCoV) or COVID-19 virus. There are five essential genes in CoVs that result in the following gene products: Spike (S) protein, Membrane (M) glycoprotein, Nucleocapsid (N), Envelope (E) protein, and the Orf1ab (a large polyprotein known as replicase/protease); all are required to produce a structurally complete viral particle. The M protein, a triple-spanning membrane protein, is the most abundant protein in the virion. It plays a central role in virion assembly and morphogenesis, and it defines the shape of the viral envelope. It is regarded as the central organizer of CoV assembly, interacting with all other major coronaviral structural proteins and turning cellular membranes into workshops where virus and host factors come together to make new virus particles. While homotypic interactions between the M proteins are the major driving force behind virion envelope formation, it needs to interact with other coronaviral structural proteins for complete virion formation. The interaction of the Spike protein with M is not required for the assembly process. However, binding of M to N protein stabilizes the nucleocapsid (N protein-RNA complex), as well as the internal core of virions, and thereby promotes completion of viral assembly. Thus, the M protein, and its interactions with other structural proteins, is necessary for the production and release of virus-like particles.
Statistics
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PSSM-Id: 394851
Aligned: 18 rows
Threshold Bit Score: 293.133
Created: 10-Apr-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_009724393  13 LKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVlAAVYRINwiTGGIAIAMACLVGLMW 92  Severe acute re...
ADY69165      32 FKAILQEWNFALGIILLAFIIILQYAYATRNLGLYVIKLVFLWLLWPVTLTCFViAAVYYMNyvYLGFSVFFASAIAIMW 111 Zaria bat coron...
YP_009072443  14 LFKVVKEWNFALGIMLFIFITLLQYAYATRSLGLYILKLVLLWLMWPLTFACFVlAAIYHVNvvFMGFAITFAIIVGCMW 93  Bat Hp-betacoro...
K9N7A1        12 IIAIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIfSAVYPIDlaSQIISGIVAAVSAMMW 91  Betacoronavirus...
AGH58718      12 IIAVIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIfSTVYPIDlaSQIISGIVAAVSAMMW 91  Human betacoron...
ATQ39392      12 IIAIIKDWNFAWSIVFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIfSAVYPIDlaSQIISGIIAAISGMMW 91  Middle East res...
AVN89297      12 IISIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIfSAVYPIDlaSQIISGIVAAVSAMMW 91  Middle East res...
YP_009361863  12 IISIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIfSAVYPIDlaSQIISGIIAGVSALMW 91  Bat coronavirus
AZK15906      12 IIAIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIfSAIYPIDlaSQIISGIVSAVSAMMW 91  Middle East res...
WP_148724442  12 IIAIIKDWNFAWSLIFLLITIVLQYGYPSRSMTVYVFKMFVLWLLWPSSMALSIfSAVYPIDlaSQIISGIVAAVSAMMW 91  Escherichia coli
YP_009724393  93 LSYFIASFRLFARTrSMWSFNPETNILLNVpLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKdLPKEITVAT 172 Severe acute re...
ADY69165     112 LGYWIASIRLFRRTgSAWSFSPEANRLLNVaIRGTMYTRPVPEDASIIVATVYRSHLIVAGHKLGRTDLSsLSTEVTVAT 191 Zaria bat coron...
YP_009072443  94 LGYWIASIRLFRRTgSVWSFNPETNRLLNVaIRGTMYTRPLQEDTAVIVATVARGVAVFAGHKLGRADLEsLPNEITVAT 173 Bat Hp-betacoro...
K9N7A1        92 ISYFVQSIRLFMRTgSWWSFNPETNCLLNVpFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDrLPNEVTVAK 171 Betacoronavirus...
AGH58718      92 ISYFVQSIRLFMRTgSWWSFNPETNCLLNVpFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDrLPNEVTVAK 171 Human betacoron...
ATQ39392      92 VSYFVQSIRLFMRTgSWWSFNPETNCLLNVpLGGTTVVRPLVEDSTSVTAVVTNGYLKVAGMHFGACDYDrLPNEITVAK 171 Middle East res...
AVN89297      92 ISYFVQSIRLFMRTgSWWSFNPETNCLLNVpFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDrLPNEVTVAK 171 Middle East res...
YP_009361863  92 ISYFVQSIRLFMRTgSWWSFNPETNCLLNVpLGGTTVVRPLVEDSTSVTAVVANGYLKMAGMHFGACDYDrLPSEVTVAK 171 Bat coronavirus
AZK15906      92 ISYFVQSIRLFMRTgSWWSFNPETNCLLNVpIGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDrLSNEVTVAK 171 Middle East res...
WP_148724442  92 ISYFVQSIRLFMRTgSWWSFNPETNCLLNVpFGGTTVVRPLVEDSTSVTAVVTNGHLKMAGMHFGACDYDrLPNEVTVAK 171 Escherichia coli
YP_009724393 173 srTLSYYKLGASQRVAGDSGFAAYSRYRIGNYKLntd-hssSSDNIALLV 221 Severe acute respiratory syndrome coronavirus 2
ADY69165     192 arTLSYYKLSWRKEAGAGNGVALYARYKVGNHRVpnsrssdDNDDVLLLV 241 Zaria bat coronavirus
YP_009072443 174 srTLSYFKMSRKVNIGVGSGVATYLRYKVGNHRVpna-rasEDQEDLLVV 222 Bat Hp-betacoronavirus/Zhejiang2013
K9N7A1       172 pnVLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSpp---itADIELALLR 218 Betacoronavirus England 1
AGH58718     172 pnVLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSpp---itADIELALLR 218 Human betacoronavirus 2c Jordan-N3/2012
ATQ39392     172 pnVLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSpp---itADSELALLR 218 Middle East respiratory syndrome-related coro...
AVN89297     172 pnVLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSpp---itADIELALLR 218 Middle East respiratory syndrome-related coro...
YP_009361863 172 pnVLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSpp---itADSELALLR 218 Bat coronavirus
AZK15906     172 pnVLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSpp---itADIELALLR 218 Middle East respiratory syndrome-related coro...
WP_148724442 172 pnVLIALKMVKRQSYGTNSGVAIYHRYKAGNYRSpp---itADIELALLR 218 Escherichia coli
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