Conserved Protein Domain Family
Closter_coat

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pfam01785: Closter_coat 
Closterovirus coat protein
This family consist of coat proteins from closteroviruses a member of the closteroviridae. The viral coat protein encapsulates and protects the viral genome. Both the large cp1 and smaller cp2 coat protein originate from the same primary transcript. Members of the closteroviridae include Sugar beet yellow virus and Grapevine leafroll-associated virus, closteroviruses have a positive strand ssRNA genome with no DNA stage during replication.
Statistics
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PSSM-Id: 250863
Aligned: 11 rows
Threshold Bit Score: 204.125
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q83049  56 LSKIVVRVDRHDALSANDVQSFREAMINFMRDKDpn-----rnQPSDKLIIAMEVGVYQMVINLGTSAKLGnannLEFT- 129 Lettuce infectious ye...
Q00686  27 SFSSVNLHIDPTLITMNDVRQLSTQQNAALNRDLfltlkgkhpNLPDKDKDFRIAMMLYRLAVKSSSLQSD----DDATg 102 Citrus tristeza virus...
Q65858  26 APFENFARASATCLNGENKKKLFEEFSVRVKTQ----------DVTESGIPTTLGMTLYALATLSTSSKIDi--eDKTPl 93  Beet yellow stunt virus
O89910  11 ATFENVSLVDQTCLHGEDCDKLRRNFEECLKLK----------GVPEDKLGLALGLCLYSCATIGTSNKVSv--qPTSTf 78  Beet yellows virus
O39857   7 SNLSNLVITDASSLNGVDKKLLSAEVVKMLVQK----------GAPNEGIEVVFGLLLYALAARTTSPKVQr--aDSDVi 74  Grapevine leafroll-as...
O93189  69 IQVYSNSPDIMSKSQEDEFKRHMESFVRQITGET---------TLSSEIFAGFYASLFQAWANQSTSEKNAsnanLENVf 139 Sweet potato chloroti...
Q9DXB4  52 KLKDIKVFSNRADVMSDQDEATFAKCMKDFATIVfg------kEPDEKEFLTFYISLVQCWLNQSTSMKNAkqmnLTNT- 124 Cucurbit yellow stunt...
O10473  50 LDTNSIYEDSTEKFTGEXLKYVMVTMDXFLLENY---------KTKTEDLLVHLAMIQKRLCTXSTSTKTKfrdkGCISy 120 Citrus tristeza virus
Q65857  37 FDHKTFKQVNPNLLNEDELREVLGKLKTELKTNL---------KALDEDIYHHVAFFLLRASVVSTSPKVEy--kGSYSy 105 Beet yellow stunt virus
O39856  36 LKNENYSSVDSSRLSDSEVKEVLEKSKESFKSEL---------ASTDEHFVYHIIFFLIRCAKISTSEKVKy--vGSHTy 104 Grapevine leafroll-as...
Q04369  28 YDLAEYSEVNPNKLNRKETDELLGVIRERFKSEL---------VITDEDFVKHLAFALIRAGNITTSTKVNy--vGAYEy 96  Beet yellows virus
Q83049 130 ---IAYdQETRTYKVADFVNYMQSR--MRNSPNVVRQYARAMEKTINNIRSAGIIN-SNGVLAAKHGVLASYRNSYSDFA 203 Lettuce infectious ye...
Q00686 103 ityTRE-GVEVDLSDKLWTDVVFNSkgIGNRTNALRVWGRTNDALYLAFCRQNRNL-SYGGRPLDAGIPAGYHYLCADFL 180 Citrus tristeza virus...
Q65858  94 vsaKIDa-VNVTITYEDIKNFVNSLtlLKNYKNKLRVFARTFEEEYLRFVRQYKHIlPNIARANKHGIPADYSYLAADFV 172 Beet yellow stunt virus
O89910  79 ikaSFGsGKELFLTHGELRSFLDSQklLEGKPNKLRCFCRTFQKDYISFAKEYRGRlPPIARANRHGLPAEDHYLAADFI 158 Beet yellows virus
O39857  75 fsnSFGe-RNVVVTEGDLKKVLDGCapLTRFTNKLRTFGRTFTEAYVDFCIAYKHKlPQLNAAAELGIPAEDSYLAADFL 153 Grapevine leafroll-as...
O93189 140 ---MVD-GKEYSWKTHSFINHMQSN--MPDVKNAARKWARAHANDYKVLVGMGIVK-PDYHLQAKQGVLPEYWHLATDFM 212 Sweet potato chloroti...
Q9DXB4 125 ---LMHgDQKKTWRTADFINYVKGn--LPHVPNPFRQYARAHEHEIEILKATGKVT-VDHHLQAKHGVLPQFWNVPADYV 198 Cucurbit yellow stunt...
O10473 121 ---VQG-GXRYKLMDKVVFPFIISKftDRETPNALRKYACTFEELHLCMARLRPDLy-ENKRTTKAGTPHLKGYLSADFL 195 Citrus tristeza virus
Q65857 106 ---SID-QRKYTVNDAWIFPQVKILasKHNKPNGLRAFCASLEGMYLSVARLGPDAf-GTRSVGKRGAPSGSEYLGADFL 180 Beet yellow stunt virus
O39856 105 ---VVD-GKTYTVLDAWVFNMMKSLtkKYKRVNGLRAFCCACEDLYLTVAPIMSERf-KTKAVGMKGLPVGKEYLGADFL 179 Grapevine leafroll-as...
Q04369  97 ---TIG-GKKFLVKDAWVFPLIKECmkKFNKPNPVRTFCATFEDAYIVIARSLPKLn-LNRTIGKRGIPSGYEFLGADFL 171 Beet yellows virus
Q83049 204 VGFgnDTTDAQLTSLMLARKQALCKGEGgsVEH--YNTMQLANL 245 Lettuce infectious yellows virus isolate 92
Q00686 181 TGA--GLTDLECAVYIQAKEQLLKKRGA--DDVvvTNVRQLGKF 220 Citrus tristeza virus strain T36
Q65858 173 Q-TsnLLKEHEQAVLLEGRNAATASS-Gt-TREsaVNLKYLGGS 213 Beet yellow stunt virus
O89910 159 S-TstELTDLQQGRLLLARENATHTEFSs--ESpvTSLKQLGRG 199 Beet yellows virus
O39857 154 -GTcpKLSELQQSRKMFASMYALKTE-GgvVNTpvSNLRQLGRR 195 Grapevine leafroll-associated virus 2
O93189 213 RGNdmATTADGLAATLMMKRNALCNKDNknSIYnvTQLTGTGLH 256 Sweet potato chlorotic stunt virus
Q9DXB4 199 NGSlmNISEDDLAANLLMKCQALKRNe---KEKkyYNVSQ---- 235 Cucurbit yellow stunting disorder virus
O10473 196 XGSlpGYSEHERGIILRASESMLARRQGyeEATelLNLRDLGKY 239 Citrus tristeza virus
Q65857 181 TSTcpLMSDHDRAVALSASRNALDRSAAsqIDKkmVSLYDFGKV 224 Beet yellow stunt virus
O39856 180 SGTskLMSDHDRAVSIVAAKNAVDRSAFtgGERkiVSLYDLGRY 223 Grapevine leafroll-associated virus 2
Q04369 172 TATsvCLNDHEKAIVLQASRAAIDRAVSssVDGkiVSLFDLGRL 215 Beet yellows virus
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