4V7Q


Conserved Protein Domain Family
Rota_Capsid_VP6

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pfam00980: Rota_Capsid_VP6 
Rotavirus major capsid protein VP6
Rotaviruses consist of three concentric protein shells. The intermediate (middle) protein layer consists 260 trimers of VP6. VP6 in the most abundant protein in the virion. VP6 is also involved in virion assembly, and possesses the ability to interact with VP2, VP4 and VP7.
Statistics
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PSSM-Id: 395780
Aligned: 3 rows
Threshold Bit Score: 738.356
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4V7Q_AC   1 MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFDFGLLGTTLLNLDANYVET 80 
P69481    1 MDVLFSIAKTVSDLKKKVVVGTIYTNVEDVVQQTNELIRTLNGNIFHTGGIGTQPQKEWNFQLPQLGTTLLNLDDNYVQS 80  Human rotavirus C/Br...
A2T3T0    1 MDVLYSLSKTLKDARDKIVEGTLYSNVSDLIQQFNQMIITMNGNEFQTGGIGNLPIRNWNFNFGLLGTTLLNLDANYVET 80  Simian rotavirus A/S...
4V7Q_AC  81 ARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLRKLSGIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFPY 160
P69481   81 TRGIIDFLSSFIEAVCDDEIVREASRNGMQPQSPALILLSSSKFKTINFNNSSQSIKNWNAQSRRENPVYEYKNPMLFEY 160 Human rotavirus C/Br...
A2T3T0   81 ARNTIDYFVDFVDNVCMDEMVRESQRNGIAPQSDSLRKLSAIKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFPY 160 Simian rotavirus A/S...
4V7Q_AC 161 SASFTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANIQQFEHIVQLRRVLTTATITLLPDAERFSFPRVINS 240
P69481  161 KNSYILQRANPQFGSVMGLRYYTTSNTCQIAAFDSTLAENAPNNTQRFVYNGRLKRPISNVLMKIEAGAPNISNPTILPD 240 Human rotavirus C/Br...
A2T3T0  161 SASFTLNRSQPAHDNLMGTMWLNAGSEIQVAGFDYSCAINAPANIQQFEHIVPLRRVLTTATITLLPDAERFSFPRVINS 240 Simian rotavirus A/S...
4V7Q_AC 241 ADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQaRFGTIIARNFDTIRLSFQLMRPPNMTPAVAALFPNAQPFEHHATV 320
P69481  241 PNNQTTWLFNPVQLMNGTFTIEFYNNGQLIDMVR-NMGIVTVRTFDSYRITIDMIRPAAMTQYVQRIFPQGGPYHFQATY 319 Human rotavirus C/Br...
A2T3T0  241 ADGATTWFFNPVILRPNNVEVEFLLNGQIINTYQaRFGTIVARNFDTIRLSFQLMRPPNMTPAVAVLFPNAQPFEHHATV 320 Simian rotavirus A/S...
4V7Q_AC 321 GLTLRIESAVCESVLADASKTMLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLV 396
P69481  320 MLTLSILDATTESVLCDSHSVEYSIVANVRRDSAMPAGTVFQPGFPWEHTLSNYTVAQEDNLERLLLIASVKRMVM 395 Human rotavirus C/Bristol
A2T3T0  321 GLTLRIESAVCESVLADASETLLANVTSVRQEYAIPVGPVFPPGMNWTDLITNYSPSREDNLQRVFTVASIRSMLI 396 Simian rotavirus A/SA11-H96
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