Conserved Protein Domain Family
FDF
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pfam09532: FDF (this model, PSSM-Id:370547 is obsolete and has been replaced by 430668)
FDF domain
The FDF domain, so called because of the conserved FDF at its N termini, is an entirely alpha-helical domain with multiple exposed hydrophilic loops. It is found at the C-terminus of Scd6p-like SM domains. It is also found with other divergent Sm domains and in proteins such as Dcp3p and FLJ21128, where it is found N terminal to the YjeF-N domain, a novel Rossmann fold domain.
Links
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Statistics
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PSSM-Id: 370547
Aligned: 10 rows
Threshold Bit Score: 85.1965
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WGS:AAHF:cds.AFUA_1G12390A 431 VPDTDYDFESANAKFNKQDLVKEAIATGSPVTEAGAhve-------------ngeVEAVDTAHHAPSTTASAYNKSASFF 497 A...
Q9C658                     460 KFTEDFDFTAMNEKFNKDEVWGHLGKSTTLDGDEDD-------------------DSPTVDEAELPKIEAKPVYNKDDFF 520 t...
Q9FH77                     426 EYTEEFDFEAMNEKFKKSELWGYLGRNNQRNQ-----------------------NDYGEETAIEPNAEGKPAYNKDDFF 482 t...
Q96F86                     199 IPDTDFDFEGNLALFDKAAVFEEIDTYERRSGTRSRgip--------------neRPTRYRHDENILESEPIVYRRIIVP 264 h...
Q7RXT2                     286 QEAGDFDFESGLAKFNKQDLFEQMRKDDLIDEADRLv------------------SHNRVPKHKPGTAGGKNLHHSENVL 347 N...
O94752                      94 DCDEEFDFAANLEKFDKKQVFAEFREKDKKDPAKLLv-----------------sHNKSPNRNYHHKQNVLGPSVKDEFV 156 S...
P39998                     100 KQQEDFDFQRNLGMFNKKDVFAQLKQNDDILPENRLqgh--------------nrKQTQLQQNNYQNDELVIPDAKKDSW 165 S...
Q9VTZ0                     402 KFEGDFDFEQANNKFEELRSQLAKLKVAEDGAPKPAtn---------------atAATATATNEQVGEKVEGVHTLNGET 466 f...
Q7RX24                     442 VPDSDFDFESSNAKFNKQEIVKEAIAGSPLGEEPAIe------------------SAAPEAVADVSGVAQQAYNKSKSFF 503 N...
VFV44740                   116 KFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEkqekpvngedkgdsgvdtqNSEGNADEEDPLGPNCYYDKTKSFF 195 S...

WGS:AAHF:cds.AFUA_1G12390A 498 DNISSEARDREERSGGRPgg-----------------------------reWRGEEEKRNiETFGQG 535 Aspergillus fu...
Q9C658                     521 DSLSSNTIDRESQNSRPR---------------------------------FSEQRKLDT-ETFGEF 553 thale cress
Q9FH77                     483 DTISCNQLDRVARSGQQHn-------------------------------qFPEHMRQVP-EAFGNN 517 thale cress
Q96F86                     265 HNVSKEFCTDSGLVVPSIsy-----------------------------elHKKLLSVA--EKHGLT 300 human
Q7RXT2                     348 DMPSTILKPKLIVKETSNd-------------------------------fWNSEADDG--VINGAD 381 Neurospora crassa
O94752                     157 DLPSAGSQINGIDAVLSSss-----------------------------ngHVTPGSKK--GSRETL 192 Schizosaccharo...
P39998                     166 NKISSRNEQSTHQSQPQQda-----------------------------qdDLVLEDDE--HEYDVD 201 Saccharomyces ...
Q9VTZ0                     467 DKKDDSGNETGAGEHEPEeddvavcydktksffdnisceaaqdrsknkkndWRQERKLNT-ETFGVS 532 fruit fly
Q7RX24                     504 DNISSEAKDRAENNGQKPgg-----------------------------reWRGEEQRRNiETFGQG 541 Neurospora crassa
VFV44740                   196 DNISCDDNRERRPT-------------------------------------WAEERRLNA-ETFGIP 224 Spanish lynx
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