6PBD,2ZIF


Conserved Protein Domain Family
YhdJ

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COG0863: YhdJ 
DNA modification methylase [Replication, recombination and repair]
Statistics
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PSSM-Id: 440623
Aligned: 708 rows
Threshold Bit Score: 114.635
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6PBD_A        15 TIIHGDCIEQMNALPEKSVDLIFADPPYNLQLGGDLlrpdnskvdavdDHWDqFESFAAYDKFTREWLKAARRVLKDDGA 94 
WP_053235965  14 TLYQGDCVEVVRGIPDASIGLSVYSPPFSNLYTYSDse----------rDMGnSVDDAEFLEHYAFLVRELLRVTRPGRL 83 
AHX12922      13 SLFHGDCVEVLAGLPEKSVDYSIFSPPFSSLYTYSNsp----------rDMGnCRTDEEFFEHFSHLVAQLKRVMKPGRN 82 
WP_010048014 459 MIHLGDCVETLRGFDPECVDYSLFSPPFASLYTYSNsp----------rDMGnCGTYAEFAAHFGFLVAELYRVLKPGRL 528
WP_012631405  15 AAYHVDTVEFTKEMPDDCVDFSVYSPPFSSLYIYSEse----------rDMGnVGSDDEFQAHYRYLVKELFRITKPGRL 84 
WP_129187538 158 AIYNADCMDVLAALPDESVHGSIYSPPFAGLYHYSSdd----------rDFSnARDYDEFREMYGYLVAEKLRVTMPGRT 227
WP_109323717 234 KLYNKSSl-VMDEIENDSVSLFIDSHPYMDQRDYRNqge------nphGK---EKTAKEYVSNFLAFCEEKKKKLKPGGY 303
WP_081436776   1 -MYHGDCIEVLKGIPDNSIHYSVFSPPFASLYTYSNse----------rDMGnCRSEDEFYLNFEFLVAELYRVLMPGRL 69 
ABK77151      32 RIYCGDAAAVLAKLGDGSVDLAVTSPPYDNLRDY-----------------------QGYSfdFDGICSQLYRVLRKGGV 88 
WP_011580539  14 NAYCADCVPFTAALPANSIDFSVYSPPFSSLYIYSEsv----------aDMGnCASDDEFFEQYRFLVREKFRATRPGRL 83 
6PBD_A        95 IWVIGSYH-NIFR---------------VG-----VAVQDLG-FWIL-NDIVWRK-----SNPMPnfKGTR----FA--- 139
WP_053235965  84 CLVHCKDLvDYKGrdgragl--rdfpgeLI-----RIHEAAG-WKYHsRVTIWKCpvtemQRTK---AHGLlykqLRtds 152
AHX12922      83 VSFHCMLLpTSKVregyigl--kdfrgdLI-----RAFQVAG-FIFAsEVVIWKDpvtamQRTK---ALGLlhktVRena 151
WP_010048014 529 VSFHCMNLpTTKEhhgyigi--qdfrgdLI-----RQFQAAG-FIYHsEVCVWKDpvtamQRTK---ALGLlhkqLKkds 597
WP_012631405  85 TAIHVKDLvYYSNasergdrgirdftgaCI-----RTHVQEG-WSFHrRITIDRCpvremQKTK---SDRLlyknFRtda 155
WP_129187538 228 TGVHAAVVpTGNTgkdalt----dfpgdVI-----RIHQAAG-WQFVaRHVIWKEplavrNRTM---AKNLahktIVtds 294
WP_109323717 304 LVTVLGES-Y-SNglcrn------iihrVI-----VGLEDNG-WESI-DSNIWVK-----SNQKYtaHPHR----FI--- 356
WP_081436776  70 LSFHCMDIpAMKErdgyigl--kdfpgdLI-----KIFQS-GdFIYHsKVVIWKDplveaTRTK---ALGLlhkqIQkds 138
ABK77151      89 LVWVVGDR--IAGgr------------sLTsfrqgLAFQDLG-FSMH-DIMIYRK-----KNTPFm-RSNA----YT--- 139
WP_011580539  84 TAIHVKDLvYYQNssergtaglrpfsddCT-----RLHIEEG-WDFHsRITIWRDpvremQKTK---AHGLlwktLRads 154
6PBD_A       140 -----NAHETLIWASK---SqnaKRYTFN---YDAL---------------------KM---------ANDE-------- 170
WP_053235965 153 tfsrqGLAEYVLGFRRwaeE---GEEVSP---VTHTe--------------------------------ESfpld----- 189
AHX12922     152 smsrqGIPDYLVTMRA---P---GDVEDR---VTHAtadyp--------------------------------------- 183
WP_010048014 598 cmsrqGIPDFVVTVRK---P---GVNPAP---VSHTndtfp--------------------------------------- 629
WP_012631405 156 artggGLPEYIVVFRKwadG---MDAVPP---VLHDpaehp--------------------------------------- 190
WP_129187538 295 syggvAAPDELLIFRK---P---GDSVVP---LEHLhgfengy-------------------agaepipSDLlkyrgwdg 346
WP_109323717 357 -----NSWEAIIVVRKp--G---GEPYF----EEQVkvessvtefklgrtslgtpyvKSse------------------- 403
WP_081436776 139 slcrqGLPDYLVTMRK---P---GK---NpelIAHPegftsfvgene------------pdapkierpvpDAdayakhea 197
ABK77151     140 -----NCYEFMFVLSK---G---RPRVFRp-iMEKTk--------------------RSgmemlvhnkKSDGinkktl-- 185
WP_011580539 155 tfsrmGLPEYLLVFRKwasD---GEEVRP---VTHTk--------------------------------ETfpve----- 191
6PBD_A       171 -------------VQMRSDW------------T--I--PLCt-----gEERikgadgqKAHPTQKPEALLYRVILSTTKP 216
WP_053235965 190 ----------qwqQWASPVWmdi------dqtN--Vl-NAAva---reDGD-------EKHMCPLQLDLIERCIRLWSNP 240
AHX12922     184 --------vsrwqQIASPVWmdi------dpnD--Tl-QFRsa---reNDD-------ERHICPLQLEVIRRGIELWTNP 236
WP_010048014 630 --------vdrwqRYASPVWmdi------dqsD--TlnNYRda---rqEQD-------ERHICPLQLGVIERCLELWSRP 683
WP_012631405 191 --------leswqDLAQPIWmtsgiwydtdetD--Vl-NVRva---rdAEA-------EKHLCPMPLDLTERLVRQYTNP 249
WP_129187538 347 dqksnryshwiwrRYASSVWddv------ridR--Vl-PFRda---rdEDD-------EKHVHPLQLDVIERYLDMRTLP 407
WP_109323717 404 -----------tcKt--NVFl-----------TsvFnnke----lksvDEN-------FQHDAPCPTSIYTDFIKAYSRP 448
WP_081436776 198 ynkdpvyshqvwrRYASPVWmdi------kqsN--Tl-NRKpa---rdDRD-------ERHICPLQLDVIERALQLWTNP 258
ABK77151     186 -------aelkpeKTRTNIW------------D--Y--AVGlggttcdRFA-------FKHPAMFPEKLAQDHILSWSKP 235
WP_011580539 192 ----------ewqQYASPVWnyprq--dlpetD--Vl-NVKva---rsDKD-------EKHLCPMPLNITRRALRMWSNR 246
6PBD_A       217 GDVILDPFFGVGTTGAAAKRLGRKFIGIEREAEYLEHAKARIAKvvp-----------------iaPEDLD 270
WP_053235965 241 GDVVLSPFAGIGSEPRSAVKLGRRAIGIELKGSYFARAVRELRDctkqldlfaraal-------------- 297
AHX12922     237 GDAVLTPYLGIGSEAYCAVEMGRRAVGIELKGSYYQQAVRNLETlsaqgilfgeaa--------------- 292
WP_010048014 684 GDLVLSPFAGIGSEGYVALKMKRRFVGCELKPSYFEIATANLRRaeaessqpt----lfdclgeseTTPAD 750
WP_012631405 250 DETVYSPFMGIGSEGYQSLLQGRRFIGTELKQSYYTQAVRYLTEaeqrgttatlfthmaaae--------- 311
WP_129187538 408 GERVLTPFMGVGSEVYSTVRMGRYGIGAELKPSYFTQAIRNLAAvdedidmqendlglfdlgtsdpAGDYE 478
WP_109323717 449 NELIVDGFVGSGTVSIGLT-LGRNVIGFDLDPKSIEFCQKRFEEslqk--------------reqeKIELS 504
WP_081436776 259 NDIVLSPFAGIGSEVYKAVQMGRRAVGIELKESYYTQAVINCRSlepeldfld------------------ 311
ABK77151     236 GDLVLDPMCGSGTTCKMAAANGRDYIGIEISKEYAAIARRRMAGiqkrisaqp------------------ 288
WP_011580539 247 GDVVYSPFMGIGSEGVVSIEEGRKFIGTELNPAYFRQAIKNLIDaeasgvfgdlfaeaae----------- 306
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