1DD1


Conserved Protein Domain Family
MH2_SMAD_4

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cd10498: MH2_SMAD_4 
Click on image for an interactive view with Cn3D
C-terminal Mad Homology 2 (MH2) domain in SMAD4
The MH2 domain is located at the C-terminus of the SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. The MH2 domain is responsible for type I receptor interaction, phosphorylation-triggered homo- and hetero-oligomerization, and transactivation. It is negatively regulated by the N-terminal MH1 domain. SMAD4, which belongs to the Dwarfin family of proteins, is involved in many cell functions such as differentiation, apoptosis, gastrulation, embryonic development and the cell cycle. SMAD4 binds receptor regulated SMADs (R-SMADs) such as SMAD1 or SMAD2, and forms an oligomeric complex that binds to DNA and serves as a transcription factor. SMAD4 is often mutated in several cancers, such as multiploid colorectal cancer, cervical cancer and pancreatic carcinoma, as well as in juvenile polyposis syndrome.
Statistics
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PSSM-Id: 199823
Aligned: 13 rows
Threshold Bit Score: 336.364
Created: 29-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
trimer
Conserved site includes 34 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Comment:Upon phosphorylation of the last two Ser residues of the flexible C-terminal SSXS motif, R-SMADs form extremely stable homotrimers as well as heteromeric SMAD complexes with SMAD4.
  • Structure:1DD1: Human SMAD4 MH2 domain homotrimer; contacts at 4.0A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #  #    ##              #####     #   #### ###    #   ## #             
1DD1_B        36 PEYWCSIAYFEMDVQVGETFKVPsscpiVTVDGYVDPSg--GDRFCLGQLSNVHRTEAIERARLHIGKGVQLECkgeGDV 113 human
NP_524610    543 PEYWCSIAYFELDTQVGETFKVPsakpnVIIDGYVDPSg--GNRFCLGALSNVHRTEQSERARLHIGKGVQLDLrgeGDV 620 fruit fly
XP_003227329 320 PEYWCSIAYFEMDVQVGETFKVPsscpiVTVDGYVDPSg--GDRFCLGQLSNVHRTEAIERARLHIGKGVQLECkgeGDV 397 green anole
NP_001090536 317 PDYWCSIAYFEMDVQVGETFKVPsscpiVTVDGYVDPSg--GDRFCLGQLSNVHRTEAIERARLHIGKGVQLECkgeGDV 394 African clawed ...
NP_001116172 315 PEYWCSIAYFEMDVQVGETFKVPsscpiVTVDGYVDPSg--GDRFCLGQLSNVHRTEAIERARLHIGKGVQLECkgeGDV 392 zebrafish
NP_001071944 292 PEFWCSITAYEMDVQVGETFKVPsscpaVTVDGYVDPSg--GNRFCLGQLSNVHRTEASEKARLHIGKGVQLVChgeGDV 369 Ciona intestinalis
EFX80419     292 PEFWCSVAYFELDTQVGETFKVPsscptVTVDGYVDPSg--GDRFCLGALSNVHRTDQSERARLHIGKGVQLDLrgeGDV 369 common water flea
ADY43285     381 PTNWCMISYYEYDTKVGETYAVGrp--sVYVDGGVDPSa--PGRFCLGSLSNVQRSDVSERCRQYIGKGIRLDVkgeGDV 456 pig roundworm
ADY43155     429 PDHWCSISYYELDTQIGETFKVRkdqseVIIDGGVNPAgakLGRFCLGALPNVHRCEASEKARLHIGKGVRISTqrdGSV 508 pig roundworm
EEC07296     414 PEYWCSIAYFELDQQVGETFKVPstysgVIIDGYVDPSg--GNRFCLGALSNVHRTEKSEKARLHIGKGVQLDLrgeGDV 491 black-legged tick
EDV21247     296 PDNWCTIAYYELDLQVGESFKVPsqfhtVSVDGFVDPSg--GNRFCLGQLSNVHRTKESERARLHIGKGVRLEChgeGDV 373 Trichoplax adha...
EEN61527     323 PEYWCSIAYFEMDVQVGEIFKVPsscptVTVDGYTDPSg--IDRFCLGQLSNVHRTEASERARLHIGKGVQLDLrgeGDV 400 Florida lancelet
CAZ31075     175 PEYWCNIAYFELDQQVGELFKVPsqysrVTVDGYTDPSs--PNRFCLGQLSNVHRSEQSEKSRLYIGKGVELDNvgeGDV 252 Schistosoma man...
Feature 1                                                                                        
1DD1_B       114 WVRCLSDHAVFVQSYYLDREAGRaPGDAVHKIYP-SAYIKVFDLRQCHRQMQQQAATAQAAAAAQAaavagnipgpgs-- 190 human
NP_524610    621 WLRCLSDNSVFVQSYYLDREAGRtPGDAVHKIYP-AACIKVFDLRQCHQQMHSLATNAQAAAAAQAaavagvanqq---- 695 fruit fly
XP_003227329 398 WVRCLSDHAVFVQSYYLDREAGRaPGDAVHKIYP-SAYIKVFDLRQCHRQMQQQAATAQAAAAAQAaavagnipgpgs-- 474 green anole
NP_001090536 395 WVRCLSDHAVFVQSYYLDREAGRaPGDAVHKIYP-SAYIKVFDLRQCHRQMQQQAATAQAAAAAQAaavagnipgpgs-- 471 African clawed ...
NP_001116172 393 WVRCLSDHAVFVQSYYLDREAGRaPGDAVHKIYP-SAYIKVFDLRQCHRQMQQQAATAQAAAAAQAaavagnipgpgs-- 469 zebrafish
NP_001071944 370 WVKCLSDHAVFVQSYYLDREAGRsPGDAVHKIYP-NAYIKVFDLRQCHRQMQQQANTASAAANAQAaavsgnipgpgsvg 448 Ciona intestinalis
EFX80419     370 WLRCLSDHSVFVQSYYLDREAGRaPGDAVHKIYP-SAYIKVFDLRQCHGQMQQQAATAQAAAAAQAaavaghmpgsnn-- 446 common water flea
ADY43285     457 WLTCLSDMPVFVHSNYLDREAGRaPGDAVHKVYS-RASLKVFDLRQCYHQLRQQSMYQMLAAEALQnpsdnsrnplvgmn 535 pig roundworm
ADY43155     509 YLECLSHKSVFVRSYYLDFEHNIeYGMTVHKFCSgAPNRKIFDLRWAYAEMEQQSESARFAVVAQAaavagyasa----- 583 pig roundworm
EEC07296     492 WLRCLSDHSVFVQSYYLDREAGRaPGDAVHKIYP-SAYIKVFDLRQCHGQMQQQAQTAQAAAAAQAaavaghipgpas-- 568 black-legged tick
EDV21247     374 WLSCLSEHSVFVQSYYLDREAGRgPFDYVHKVYP-KAYIKVFDLQLCYQQMQQEASKAQAAAAAQAaavigtggsvg--- 449 Trichoplax adha...
EEN61527     401 WVRCLSDHAVFVQSYYLDREAGRaPGDAVHKIYP-SAYIKVFDLRQCHRQMQQQAATAQAAAAAQAaavagnvpgpgsv- 478 Florida lancelet
CAZ31075     253 WIRCLSEFSVFVQSYYLDREAGRaPGDAVHKIYP-GAYIKVFDIRQCHEEMKSLAQSSHAAAVRQAaavvgspttsdlls 331 Schistosoma man...
Feature 1                                      ###   #  #                       #      # # #  #  
1DD1_B       191 ------------------vggiapaislsaAAGIGVDDLRRL-CILRMSFVKGWGPDYpRQSIKETPCWIEIHLHRALQL 251 human
NP_524610    696 --------------------mggggrsmtaAAGIGVDDLRRL-CILRLSFVKGWGPDYpRQSIKETPCWIEVHLHRALQL 754 fruit fly
XP_003227329 475 ------------------vggiapaislsaAAGIGVDDLRRL-CILRMSFVKGWGPDYpRQSIKETPCWIEIHLHRALQL 535 green anole
NP_001090536 472 ------------------vggiapaislsaAAGIGVDDLRRL-CILRMSFVKGWGPDYpRQSIKETPCWIEIHLHRALQL 532 African clawed ...
NP_001116172 470 ------------------vggiapaislsaAAGIGVDDLRRL-CILRMSFVKGWGPDYpRQSIKETPCWIEIHMHRALQL 530 zebrafish
NP_001071944 449 -----------------giapaiglpglsaAAGIGVDDLRRL-CILRMSFVKGWGPDYpRQDIKQTPCWIEIQLHRALQL 510 Ciona intestinalis
EFX80419     447 ------------------vpgmpppisltaAAGIGVDDLRRL-CILRLSFVKGWGPDYpRNSIKETPCWIEVHLHRALQL 507 common water flea
ADY43285     536 ----------------reqidqvlhkreieAANIGVDDLRRL-CNLGISFVKGWGPDYdRKSIKETPCWIEVQISRALQL 598 pig roundworm
ADY43155     584 ---------------------tsltpslieHAGTGVDDLRRVcCTIAISFVKGWGSGYnRTSIKETPCWVELQLHRPLQL 642 pig roundworm
EEC07296     569 ------------------vggiapaislsaAAGIGVDDLRRL-CILRLSFVKGWGPDYpRQSIKETPCWIEVHLHRALQL 629 black-legged tick
EDV21247     450 --------------------giapainmgsALGIGVDDLRRL-CILRFSFVKGWGPDYpRKDIKQTPCWVEIHLHRALQL 508 Trichoplax adha...
EEN61527     479 -----------------ggiapaidlglssAASIGVDDLRRL-CILRMSFVKGWGPDYpRQSIKQTPCWIEIHLHRALQL 540 Florida lancelet
CAZ31075     332 qlpgalplgsnqaapgslpgtlgtgasimaTAGVGVDDLRRL-CMLRLSFVKGWGPDYpRRSIKETPCWIEIQLHRPLQL 410 Schistosoma man...
Feature 1        ##   #
1DD1_B       252 LDEVLH 257 human
NP_524610    755 LDEVLH 760 fruit fly
XP_003227329 536 LDEVLH 541 green anole
NP_001090536 533 LDEVLH 538 African clawed frog
NP_001116172 531 LDEVLH 536 zebrafish
NP_001071944 511 LDEVLH 516 Ciona intestinalis
EFX80419     508 LDEVLH 513 common water flea
ADY43285     599 LDEVLH 604 pig roundworm
ADY43155     643 LDQLLK 648 pig roundworm
EEC07296     630 LDEVLH 635 black-legged tick
EDV21247     509 LDQVLQ 514 Trichoplax adhaerens
EEN61527     541 LDEVLH 546 Florida lancelet
CAZ31075     411 LDEVLQ 416 Schistosoma mansoni

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