4ED5,4FXV,5SZW,3HI9,4EGL


Conserved Protein Domain Family
RRM1_HuR

?
cd12769: RRM1_HuR 
Click on image for an interactive view with Cn3D
RNA recognition motif 1 (RRM1) found in vertebrate Hu-antigen R (HuR)
This subgroup corresponds to the RRM1 of HuR, also termed ELAV-like protein 1 (ELAV-1), a ubiquitously expressed Hu family member. It has a variety of biological functions mostly related to the regulation of cellular response to DNA damage and other types of stress. HuR has an anti-apoptotic function during early cell stress response; it binds to mRNAs and enhances the expression of several anti-apoptotic proteins, such as p21waf1, p53, and prothymosin alpha. Meanwhile, HuR also has pro-apoptotic function by promoting apoptosis when cell death is unavoidable. Furthermore, HuR may be important in muscle differentiation, adipogenesis, suppression of inflammatory response and modulation of gene expression in response to chronic ethanol exposure and amino acid starvation. Like other Hu proteins, HuR contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). RRM1 and RRM2 may cooperate in binding to an AU-rich RNA element (ARE). RRM3 may help to maintain the stability of the RNA-protein complex, and might also bind to poly(A) tails or be involved in protein-protein interactions.
Statistics
?
PSSM-Id: 410162
Aligned: 10 rows
Threshold Bit Score: 165.209
Created: 15-Sep-2011
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:Homo sapiens HuR protein binds RNA, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1           # # ##  #                    # #      ### # #                       ## #   ##
4ED5_A         1 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 80  human
NP_990164     18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97  chicken
NP_001088628  18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR 97  African clawed ...
NP_571527     16 SKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVNPNDAERAISTLNGLRLQSKTIKVSYAR 95  zebrafish
4FXV_A        18 QGTNLIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97  human
5SZW_A        20 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 99  human
3HI9_A         3 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 82  human
4EGL_A         1 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 80  human
XP_005989935  18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKIAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSYAR 97  coelacanth
XP_007899293  31 ARTNLIVNYLPQNMTQDELRSLFGSIGEVESAKLIRDKVAGHSLGYGFVNYVDHKDAERAINTLNGLRLQSKTIKVSYAR 110 elephant shark
Feature 1         #
4ED5_A        81 PS 82  human
NP_990164     98 PS 99  chicken
NP_001088628  98 PS 99  African clawed frog
NP_571527     96 PS 97  zebrafish
4FXV_A        98 PS 99  human
5SZW_A       100 PS 101 human
3HI9_A        83 PS 84  human
4EGL_A        81 PS 82  human
XP_005989935  98 PS 99  coelacanth
XP_007899293 111 PS 112 elephant shark

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap