3JSB


Conserved Protein Domain Family
ArenaCapSnatch
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pfam17296: ArenaCapSnatch 
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Arenavirus cap snatching domain
This domain represents the N-terminal domain of the Arenavirus polymerase that is involved in cap snatching during transcription initiation.
Links
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Statistics
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PSSM-Id: 340012
Aligned: 3 rows
Threshold Bit Score: 304.072
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3JSB_A    9 DEIISELRELCLNYIEQDERLSRQKLNFLGQREPRMVLIEGLKLLSRCIEIDSADKSGCTHNHDDKSVETILVESGIVCP 88   Lymphocytic choriom...
O09705    2 EEDIACVKDLVSKYLVDNERLSRQKLAFLVQTEPRMLLMEGLKLLSLCIEVDSCNANGCEHNSEDKSVERILHDHGILTP 81   Lassa virus Josiah
P20430    2 DETVSELKDLVRKHIPNRHEFAHQKDAFLSHCHSGSLLQEGFKLLSNLVELESCESHACHLNTCQKYVDVILSDHGIPCP 81   Tacaribe virus stra...

3JSB_A   89 GLPLIIPDGYKLIDNSLILLECFVRSTPASFEKKFIEDTNKLACIREDLAVAGVTLVPIVDGRCDYDNSFMPEWANFKFR 168  Lymphocytic choriom...
O09705   82 SLCLWYPDGYKLTGNVLILLECFVRSSPANFEQKYIEDFKKLEQLKEDLKSVDINLIPLIDGRTSFYNEQIPDWVNDKLR 161  Lassa virus Josiah
P20430   82 TLPKVIPDGFKLTGKTLILLETFVRVNPEEFERKWKSDMTKLLNLKQDLLRSGITLVPVVDGRTNYSNRFTPEWVVERIR 161  Tacaribe virus stra...

3JSB_A  169 DLLFKLLEYSN 179  Lymphocytic choriomeningitis virus (strain Armstrong)
O09705  162 DTLFSLLKYAQ 172  Lassa virus Josiah
P20430  162 WLLIEILRKSR 172  Tacaribe virus strain Franze-Fernandez
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