5E50,5W7W,5W7W


Conserved Protein Domain Family
FHA_APLF

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cd22717: FHA_APLF 
Click on image for an interactive view with Cn3D
forkhead associated (FHA) domain found in aprataxin and PNK-like factor (APLF) and similar proteins
APLF, also called apurinic-apyrimidinic endonuclease APLF, PNK and APTX-like FHA domain-containing protein, or XRCC1-interacting protein 1 (XIP1), is a novel apurinic-apyrimidinic (AP) endonuclease and 3'-5' exonuclease with conserved zinc-finger-like motifs involved in single-strand and double-strand DNA break repair. It is recruited to sites of DNA damage through interaction with poly(ADP-ribose), a polymeric post-translational modification synthesized transiently at sites of chromosomal damage to accelerate DNA strand break repair reactions. It can introduce nicks at hydroxyuracil and other types of pyrimidine base damage. Together with PARP3, APLF promotes the retention of the LIG4-XRCC4 complex on chromatin and accelerate DNA ligation during non-homologous end-joining (NHEJ). APLF contains an FHA domain at its N-terminus. The FHA domain is a small phosphopeptide recognition module.
Statistics
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PSSM-Id: 438769
Aligned: 16 rows
Threshold Bit Score: 158.981
Created: 7-Sep-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
phosphopeptide
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:phosphopeptide binding site [polypeptide binding site]
Evidence:
  • Structure:5E50; Homo sapiens APLF in complex with XRCC4-derived phosphopeptide through its FHA domain, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                  ###   ## #####                  ###                   
5E50_A         9 GFELQPRDg---gPRVALAPGETVIGRGPlLGITDKRVSRRHAILEVAG-GQLRIKPIHTNPCFYQSSeksqLLPLKPNL 84  Homo sapiens
XP_002117261  58 SAFLKSRSn---gKITEIKPGTVTIGRGPfLEVTEKRVSRKHAELKYLD-EKLILIPTHANPCFYRAAgqdkFDVLPRNV 133 Trichoplax adha...
XP_002732503   3 GVVLRPCTntdwvDDIPLPPGQTILGRGPfLGISDKRVSRSHAILEVDS-GKLRILPTHINPTFHQRLgtdkLRPLAKDE 81  Saccoglossus ko...
KFM64363       3 KITLKPLDdg--qKAVEIPVGKTTIGRGPfLGCSDKKVSRNHAVLEVTSkGEVFLTPTHVNPCFFQPTadspGQILKKDV 80  Stegodyphus mim...
XP_009022542   6 LVSLYPVDg---gDPICIPSDKTVIGRGSlFKITDKRVSRNHATLEIVD-GKLIIVPIHTNPCFYKAVggstSVVLPKDK 81  Helobdella robusta
XP_009292741   3 GFELEQVDg---gSPVDLPYGETVLGRGPfLGVNDKRVSRNHGILENQN-GVLRLKPTHLNPCFIQTNivapPQPLEKDQ 78  zebrafish
XP_013067081   3 GITLQEVGg---dLTINIPEEATVIGRGQfLQVTDKRVSRSHAVLEVID-DKLFITPTHTNPCFLRTTsskeQKVLTREI 78  Biomphalaria gl...
XP_018118293   3 GFQLEAVEg---sGGASLSEGETMIGRGPfLGISDKRVSRSHALLEVVD-RKLRIKPVHVNPCFYQGAgensFMPLEKDK 78  African clawed ...
PFX30061      66 SFNLRPLDd---eKDIAVPFGKTTIGRGPfLGVTDKRVSRLHAVLEVTN-ENLSILPLHTNPTFLKASdsqkFISLKKDE 141 Stylophora pist...
PIK53557       3 GVELKPCGvs-sgDNILVPLGSTTVGRGPfLGISDKRVSRNHAILDIED-GKFRVKPIHVNPTYFSKTgdskLKPLKKDE 80  Japanese sea cu...
Feature 1                               
5E50_A        85 WCYLNpGDSFSMLvdKYIFRILS 107 Homo sapiens
XP_002117261 134 EKELQnGDEVSLLpsDLYYQVVI 156 Trichoplax adhaerens
XP_002732503  82 WQELKnGEKFSLIpeFHIFKVVI 104 Saccoglossus kowalevskii
KFM64363      81 PHRLVnGDSFSLLprAFRYQLIV 103 Stegodyphus mimosarum
XP_009022542  82 PQPLEhGDVISLLpdKLFFKIHY 104 Helobdella robusta
XP_009292741  79 WHCLKdGDIFSLMpgKYIYRVHI 101 zebrafish
XP_013067081  79 KQSLEhGDEFGLLpdQLFYRVVY 101 Biomphalaria glabrata
XP_018118293  79 WHWLHgGDCISLLpdKYAFRVIA 101 African clawed frog
PFX30061     142 IRVLInGDVIALLpdSLCFMVVC 164 Stylophora pistillata
PIK53557      81 WKELEnGNRISLTpnEHIFEVMI 103 Japanese sea cucumber

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