6QB7


Conserved Protein Domain Family
H1_KCTD16

?
cd22219: H1_KCTD16 
H1 domain found in potassium channel tetramerization domain-containing protein 16
Potassium channel tetramerization domain-containing protein 16 (KCTD16) is a BTB/POZ domain-containing protein that is an auxiliary subunit of gamma-aminobutyric acid type B (GABA-) receptors associated with mood disorders. It interacts with amyloid beta precursor protein (APP), a type I transmembrane protein involved in a variety of cellular processes such as cell adhesion and axon guidance. KCTD16 generates largely non-desensitizing receptor responses. It consists of an N-terminal BTB domain followed by a region called the H1 domain. The BTB domain mediates interaction with the receptor. The C-terminal H1 domain, which possesses a beta-propeller-like fold, engages in interactions with G-protein beta-gamma subunits. In the related protein KCTD12, the H1 domain is also responsible for desensitization. This model corresponds to the H1 domain of KCTD16, which may not be involved in desensitization.
Statistics
?
PSSM-Id: 409030
Aligned: 7 rows
Threshold Bit Score: 235.195
Created: 23-Jul-2020
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
pentamerputative G
Conserved site includes 49 residues -Click on image for an interactive view with Cn3D
Feature 1:pentamer interface [polypeptide binding site]
Evidence:
  • Structure:6QB7; Homo sapiens KCTD16 H1 domain forms a pentamer; contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1           ### #   ###         # ###  ## # ##                #        ####      # ## ## 
6QB7_A        37 DRKWGFITVGYRGSCTLGREgqaDAKFRRVPRILVCGRISLAKEVFGETLNESRDPDRaPERYTSRFYLKFKHLERAFDM 116 human
Q68DU8       160 DRKWGFITVGYRGSCTLGREgqaDAKFRRVPRILVCGRISLAKEVFGETLNESRDPDRaPERYTSRFYLKFKHLERAFDM 239 human
XP_425217    160 DRKWGFITIGYRGSCTIGREsqaDAKFRRVPRILVCGRIALVKEVFGESLNESRDPDRaPERYTSRFYLKFKHLERAFDM 239 chicken
NP_001122224 151 DRKSGFLTVGYRGSCTMGREnrtDAKFRRVPRIMICGRIALAKEVFGETLNESRDPDRtADKYTSRFYLKFKHLERSFDM 230 zebrafish
XP_005996158 160 DRKWGFITVGYRGSCTMGREsqaDAKFRRVPRILICGRIALAKEVFGETLNESRDPDRaPERYTSRFYLKFKHLERAFDM 239 coelacanth
XP_018107629 160 DRKWGFVTVGYRGSCTMGREsqaDAKFRRVPRILVCGRISLAKEVFGDTLNESRDPDRaPEKYTSRFYLKFKHLERAFDM 239 African clawed ...
NP_001032315 153 DRRYGFITVGYKSSCAFGRDt--DPKARGIPKIFICGRVGLAKEVFGDALNESRDPDRlPERYTSQFYLKFRHLERAFDM 230 zebrafish
Feature 1         ##    # ########  #    ##### # #### #   
6QB7_A       117 LSECGFHMVACNSSVTASFINQYTDDKIWSSYTEYVFYREP 157 human
Q68DU8       240 LSECGFHMVACNSSVTASFINQYTDDKIWSSYTEYVFYREP 280 human
XP_425217    240 LSECGFHMVACNSSVTASFVNQYTDDKVWSSYTEYVFYREP 280 chicken
NP_001122224 231 LSECGFQMVACNSSVTASIINQHTDDKIWSSYTEYVFYRGP 271 zebrafish
XP_005996158 240 LSECGFHMVACNSSVTASFVNQYTEDKIWSSYTEYVFYRGP 280 coelacanth
XP_018107629 240 LSESGFLMVACNSSVTASFVNQYTDDKIWSSYTEYVFYSKY 280 African clawed frog
NP_001032315 231 LAESGFHIVACNSSLTTSPHNRHADDRYWSNNTEYVFYGKY 271 zebrafish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap