Conserved Protein Domain Family
PBP2_PnhD_1

?
cd13571: PBP2_PnhD_1 
Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold
This subfamily includes putative periplasmic binding components of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
?
PSSM-Id: 270289
Aligned: 21 rows
Threshold Bit Score: 247.172
Created: 27-Sep-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the phosphonate-binding protein family.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                      #               # #               
ZP_00053864   15 AAEGPVRIALTAaavrd--elpfYDRWAAYLGRKLGrPVEFVQrrSYRDIIEMLRTGELDFSWVCSYSFVQald-agLVD 91  Magnetospirillu...
NP_967811     26 AVPPSITIGVIPggnpe-nlreqGLALAKELQAKLNiPVNIYVskNYVGLIEAMKTKKVDFAFFSSSTYVFaeq-qaQAK 103 Bdellovibrio ba...
ZP_01694136   28 YAQRPLVVGISTdvsslkerqkaGETIAAYLAKKLQkKIVVLLpqKNNELIQMLKDKKVDIAFLNTFGYILasa-evAID 106 Microscilla mar...
YP_723633     51 YSSEPLQVAVLPwqspe-gqqekLQPLAEHLETLLKrPVNFQItkNYAEAVDLIVKEEVDMAYLAALTYIKakernpNIR 129 Trichodesmium e...
NP_486778     82 NVLPKLKIGLLStqnft-eqqqiIKPLNDYLETSLGrQVHFFIakDHEEIIEWLTQDKLDLAYLGSVAYLEavdrgaEIQ 160 Nostoc sp. PCC ...
YP_001916833  69 NDSHLLRVGLGAitagr-eslyyYKELLDHLEDQLGmEVKIHQtrTHSEMNELIRHGNIDIAFICSYSYIQlqd-shGVP 146 Natranaerobius ...
YP_001633664  40 VTSPPLRVSVASvisaq-gtvqsYQPLLDYLSARLGrEVTLIQrrTYTETNELIGRNEVDVAFVCTSAYIDgrd-ryGMS 117 Chloroflexus au...
YP_077048     72 SPRPVLKVGLATmmspr-esllrYGPLLDYLNSKLErHVEVVLasSQTEMLELLRTGGVQLGLVGSLAYVQgad-gfGLK 149 Symbiobacterium...
YP_002457686  49 ENTGVLKVGVASvlspr-etleeYDRFDEYLEKEIGrPVELVQrgSYQEINNLVKTQAVDVAFICSGAYVVgn--kdDLD 125 Desulfitobacter...
ZP_01667669   46 VEGPVLRVAVSSilspk-etltvYQPLLDYLAGQLGyPVVLLQrrTYREVNELLQNSGADVAFVCSGGYVAgsq-mfGME 123 Thermosinus car...
Feature 1                      #                                   ###                           
ZP_00053864   92 LVAtp--vfRGKPLYqSYIIVPRDSptt------dlmQLEGkSFAYTDpdSNTGYIVPRAMLrdsghn-perffrTIFFT 162 Magnetospirillu...
NP_967811    104 VLLkk---vWHEPYYySMIITPQRSgik------slkALKGkKVAFVDdkSSSGYLYPQVALrkegls--dtdfkEVVFT 172 Bdellovibrio ba...
ZP_01694136  107 PLVvvsadaRQPAAYkSCLIKHPDTkvktipdvvkksNAAQlRFAFVNptSTSGHLVPRLYFnslglnyteshfkEIIFG 186 Microscilla mar...
YP_723633    130 PLVmpinriSGRPWYtSVIIANTTKnik------tleDLKGkRFAFVSpsSTSGFLIPMNGLetagin-ptrdfsKIRYS 202 Trichodesmium e...
NP_486778    161 PLVtsidkhTGQPWYrACIIVKADSsik------tlkDLKGkRVAFVDksSTSGYLMPLVALskqsid-pqkdfrTVIYA 233 Nostoc sp. PCC ...
YP_001916833 147 LLVvp--eiNGTTTYrSVILARKELnid------afnQLENkTFAFTDplSNAGKLYPAYLLkqqgqs-pqdffeHSYFT 217 Natranaerobius ...
YP_001633664 118 LLVap--qvNGETTYhSLLIVPTDSpar------smaDLRGkVFAFTDptSFSGRVYPTALVqelgds-pesffqDTFFT 188 Chloroflexus au...
YP_077048    150 ALAvp--eyQGEPTHrSLILVRRYSgle------efaHLKGhTFAYTDpvSATGWLYPQTLVlelnea-verffdRALFT 220 Symbiobacterium...
YP_002457686 126 LLAvp--vvNGKSTYqSYIIVNAQSqis------rfeQLKGsVFGYTDpiSFSGTIYPMYLVnqiqas-snnffnRVVYT 196 Desulfitobacter...
ZP_01667669  124 ILAqp--evNGRNTYqSYIIVQAEStal------silDLQGkTFAFTDpmSFSGRIAPVYMLvsrgid-sdkffsRTFYT 194 Thermosinus car...
Feature 1          #                 #                                 #                         
ZP_00053864  163 WDHGQAIEAVADKVADGAAVDsyvweylaa----qrprlaerTKIIQRSEEfSFPPMVARR---GIDPDLRRRFADAILS 235 Magnetospirillu...
NP_967811    173 GNHQASIQFLEAKKVDAAAVFsddekgtqgawekfgtdkkakYRILWKSAPiPNDPFCVRQdfyDAYPKTTHTLMFALID 252 Bdellovibrio ba...
ZP_01694136  187 NNHTNTIRQIASHKADLGACSyddlqkmma----tgkiskkaVEVLWVSSPiVNGPIAVRT---QLDKSLKTAIGQAFLK 259 Microscilla mar...
YP_723633    203 GSHDKATQDLVDGVVDAVTNDkasflrsq-----ksgkldanYKIIWESNPiPAPPIVINAk--KFTPQMIVQLQEILID 275 Trichodesmium e...
NP_486778    234 GNHRKSIAALENGSVDAAATNvssyitfkk----sgkltpqdYRLIWESAPiPNFPIVISQ---KLAPELIQQLKQVFIS 306 Nostoc sp. PCC ...
YP_001916833 218 YSHNNSVDSVIEGVVDAAAVDslvydylyt----kdparfenVEIIHTSPAfEISPVVASP---KLKTSLKEDIKNFFLE 290 Natranaerobius ...
YP_001633664 189 YSHDAAIEAVANGLADGAAVDslvfhfals----rhpelreqVKVIHTSPPfGIPPVVVGP---GVRPQLRAELQNILLG 261 Chloroflexus au...
YP_077048    221 GTDDKAIQALDHGLVDGAAVNsviydmava----edpdlarrLRAIGSSEPlGSPPVVVSP---TVGSELVAQLESVFLQ 293 Symbiobacterium...
YP_002457686 197 YSHDNSIKAVLDGVVNAAGVDslvyefals----kdptlatkLKIINRSQEvGSPPVVVNK---FIDPNLRTVLQEALLR 269 Desulfitobacter...
ZP_01667669  195 YSHDNSIRAVADGIVEAAAVDsmvydrave----knqdlakrVKVIDRSPLvGNPPVVAGP---HTDERLKNRLRALLFA 267 Thermosinus car...
Feature 1                                             
ZP_00053864  236 MAADaegrrll------gemmldGFVALPASSYDKVR 266 Magnetospirillum magnetotacticum MS-1
NP_967811    253 ALEQnrnkdty-----seilgsrDLMPATSKQYDPVR 284 Bdellovibrio bacteriovorus HD100
ZP_01694136  260 MPDNapqlqaafkklwhtsgkktYFVKAQNTWYDPIR 296 Microscilla marina ATCC 23134
YP_723633    276 APIGvvdvs---------gtesnGYTLGQDADFEEIR 303 Trichodesmium erythraeum IMS101
NP_486778    307 TPEGmkdil---------gaesaGYTLVGPDHYAPIQ 334 Nostoc sp. PCC 7120
YP_001916833 291 LHETsngqyil------eqlgieQFEPAQDSSYDSIR 321 Natranaerobius thermophilus JW/NM-WN-LF
YP_001633664 262 MADDpsplaqta----leslgidRFVMIDDAAYASAR 294 Chloroflexus aurantiacus J-10-fl
YP_077048    294 MGEDeegravl------qslrldRFVAPDPAWYEPIR 324 Symbiobacterium thermophilum IAM 14863
YP_002457686 270 MDSDplgqeal------knlnyeRFALPSHQDYGAIE 300 Desulfitobacterium hafniense DCB-2
ZP_01667669  268 MHEDkagktal------kslgydRFVQPDEATYVELK 298 Thermosinus carboxydivorans Nor1

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap