2CTK


Conserved Protein Domain Family
KH-I_Vigilin_rpt13

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cd22416: KH-I_Vigilin_rpt13 
thirteenth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
Vigilin, also called high density lipoprotein-binding protein, or HDL-binding protein, is a ubiquitous and highly conserved RNA-binding protein that shuttles between nucleus and cytoplasm presumably in contact with RNA molecules. It may be involved in chromosome partitioning at mitosis, facilitating translation and tRNA transport, and control of mRNA metabolism, including estrogen-mediated stabilization of vitellogenin mRNA. Vigilin is up-regulated by cholesterol loading of cells and functions to protect cells from over-accumulation of cholesterol. It may play a role in cell sterol metabolism. Disruption of human vigilin impairs chromosome condensation and segregation. Vigilin has a unique structure of 14-15 consecutively arranged, but non-identical K-homology (KH) domains which apparently mediate RNA-protein binding. The model corresponds to the thirteenth one.
Statistics
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PSSM-Id: 411844
Aligned: 25 rows
Threshold Bit Score: 105.005
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putativeGXXG motif
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   # ### #####  ##  ##    ####                                         
2CTK_A         16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPElQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRA 93   human
EEC13290      979 PVSQEVEVPFKLHRFIIGQKGAGVRRLMEDHDVNISVPPQAdESDVLVVSGTPANVASAKEALLQRVEQILEEEEDRK 1056 black-legged tick
XP_007910050  966 PVTIEVEVPFDLHRYIIGQKGSGIRKMMEEYEVNIAVPPHEeQSDTIRVTGLVANLDRARDGLTERVKELQAEQEDRA 1043 elephant shark
PIK60788       70 PITKEVSIPFDYHRFIIGKKGDGIRQLMTTHDVNIAIPPADqQSDTVTVVGTATCVDGAVAALMEKVKELDSEQEDKK 147  Japanese sea cu...
AFX64901      113 PISEEVNVPYKYHRFLIGQKGEEVRRFMKTYEVNVSIPQADqESDVITITGVAEKVADAKEGLAAKVKELEKEEEDRV 190  Botryllus schlo...
KAB0795148   1212 PITIDVNVPFDLHRSIIGQKGQDVKKLMDRYDVHIVLSPPEdKQDIIKITGTPANVEDAKAAVEERVLELEKERKDRE 1289 common eastern ...
KFD70346     1106 PVNETVAVPFEFHRSLIGRQGAEIRKFMDEYNVSVQIPPAEqRLDEIRLVGRRSCVQEALSAILEKVEQLKKEAKERE 1183 pig whipworm
VDN59505      975 PITKNVNVAFEHHRFLIGKGGEAIRSMMQTHDVNISIPQESaNSNEIAVTGPSANVEEAIAHILKRVVEFEEAAEDRR 1052 Guinea worm
EDV24343      932 PISEEMNVSIEYHRSLIGVKGRDIRAMMEKYSVNISVPPADqHSDCIKIFGTPSQIEKAKSAILDRIKELEEEKEDKK 1009 Trichoplax adha...
BAN20317      941 PIVVEMDVPLEYHRGIIGPKGQNVRDMMNAFDVYIDVPGPNtQQEFIKITGAPAAVERAKEGILDEMRKIDEEKEDRK 1018 Riptortus pedes...

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