1XJK


Conserved Protein Domain Family
NrdJ_Z

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TIGR02504: NrdJ_Z 
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ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus, Thermoplasma, Corynebacterium, and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]
Statistics
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PSSM-Id: 274168
Aligned: 23 rows
Threshold Bit Score: 619.34
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1XJK_A         22 ILRDRYfmkDLDGn----yLE-TkWEDVAR---RVARVVATAELLNPSykknekldrikewEDIFFRVLKARLFIPNSPT 93   Thermotoga ma...
CAD13723       31 VLADRY---LAPG------ET-T-PEQVFR---RVAHALAAAEAPDRRt-----------hFARLFYVNMLHGAIGAGRI 85   Ralstonia sol...
AAQ66237       42 IYE-----------------K-S-PMDMHK---RIASEIARIEKKYPnp-----------lSEKELFDLFDHFRYIVPQG 88   Porphyromonas...
CAD77768      124 QLIHRVtrtISDWgladgyFD-T-PEDGERfyrDLTWLSLHQHGAFNSpvwfnv--glhaqYDVEGDMC-NWHWDRTENT 198  Rhodopirellul...
CAA12167       98 QLIDRIvktYRKAgeeykyFA-S-PADAEIfehELAYALLHQIFSFNSpvwf-------------------------nvg 150  Streptomyces ...
WP_009610312   12 VFLDRYalkDREGk----pVE-KkPEEMFK---RVAKAIATNEKEE----------------EMFYKVMSEWKFIPGGRI 67   Caldanaerobac...
WP_003114125   25 IWDKKYrlkSKDGt----pVDaS-VDGTWQ---RVARALADVEDKASReh----------wYGRFLWALRN-GAIPAGRI 85   Pseudomonas a...
WP_010932265   67 QVAHRMvgcWQDWgkrynyFD-S-DEDAQAfydEVVYMLLAQMAAPNSpqwfnt--glqfaYGINGPAQGHFYVDPETGE 142  Chlorobaculum...
WP_004082700   67 KLDRIKeweDIFFr----vLK-A-RLFIPN---SPTLFNAGLGV-----------------KHDLLWKPIDQMTLEDYEE 120  Thermotoga ma...
WP_010898958  113 GIITRSldvIEKPl-----EI-F-YEQIAK---RNATGLAAVETTEEKrq---------qsFERFYEELVNMNFVPAGRV 173  Bacillus halo...
1XJK_A         94 LFNa-GlgvkhdllwkpidqmtledyeeiyrsRNHLHMLSACFVVPVG----DsIEE---------IFEAVKEYALITKV 159  Thermotoga ma...
CAD13723       86 MANa-G--------------------------VDRQATMVNCFVHPIV----G-PGAqvag--aadIDRALKQAQVTLRM 131  Ralstonia sol...
AAQ66237       89 SPMt-G--------------------------IGNDFQIASLSNCFVV----G--LDgdad-sygaIIRIDEEQVQLMKR 134  Porphyromonas...
CAD77768      199 TAQpdN--------------------------PYEYPQGSACFIQSVD----DnMED---------IMRLACSEAMLFKF 239  Rhodopirellul...
CAA12167      151 TPQp--------------------------------qQVSACFILSVD----DsMES---------ILDWYKEEGMIFKG 185  Streptomyces ...
WP_009610312   68 LAGa-G--------------------------TGREVTYFNCFVIPVE----A-NDPkkgndsraaIMDTIAKMLEINSR 115  Caldanaerobac...
WP_003114125   86 ISNa-G--------------------------ALGHKPATSTINCTVSgtiqD-SMd--------nILEKVHEAGLTLKA 129  Pseudomonas a...
WP_010932265  143 IREseD--------------------------AYSRPQAHACFIQSVK----DdLVNeg------gIFDLAVREARVFKF 186  Chlorobaculum...
WP_004082700  121 IYr--S--------------------------RNHLHMLSACFVVPVG----DsIEE---------IFEAVKEYALITKV 159  Thermotoga ma...
WP_010898958  174 LYGa-G--------------------------AKTDVTYFNCYVMPFV----Kdsr--------egISEHRKQVMEIMSR 214  Bacillus halo...
1XJK_A        160 GGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVVKQGS-RRRGALMGILNINHPDIEEFIDAKkENTGeavL 238  Thermotoga ma...
CAD13723      132 GGGVGYDFSAVAPMDALQTGEDGGTGSVCEVIERFDHTCAALALAN-TRGGAQMAVLRCNHPDLAAFVAAKrGRKR---W 207  Ralstonia sol...
AAQ66237      135 RGGVGHDLSHIRPKGSPVKNSALTSTG-LVPFMERYSNSTREVAQD-GRRGALMLSVSIKHPDSESFIDAKmTEGK---V 209  Porphyromonas...
CAD77768      240 GSGTGTDLSTIRSQREKLSG-GGTPSGPLSFMRVYDSIAGVVKSGGkTRRAAKMQSLKVWHPDILEFIECKwAEEK---K 315  Rhodopirellul...
CAA12167      186 GSGAGLNLSRIRSSKELLSS-GGNASGPVSFMRGADASAGTIKSGGaTRRAAKMVILDVDHPDIEGFIETKvKEEE---K 261  Streptomyces ...
WP_009610312  116 GGGVGINWSTLRPRGAYVKGVGGTSSGAVSWMLAANEVATQVEQGG-SRRAALMFMLWDWHPDIEEFIKVKkDLTK---M 191  Caldanaerobac...
WP_003114125  130 GCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAG-GRRGAQMGTFDVSHPDVREFIRAKrEDGR---L 205  Pseudomonas a...
WP_010932265  187 GSGSGTNYSNLRGSGEKLSG-GGSSSGLMSFLKIFDSAAGAIKSGGtTRRAAKMVIVDIDHPDVEKFIEWKaKEED---K 262  Chlorobaculum...
WP_004082700  160 GGGVGSNFSELRPKGSFVAGTHGKASGPVSFMHVFNSAISVVKQGY-RRRGALMGILNINHPDIEEFIDAKkENTGeav- 237  Thermotoga ma...
WP_010898958  215 GGGVGTNGSTLRPRNTLARGVNGKSSGSVSWLDDIAKLTHLVEQGG-SRRGAQMIMLADWHPDVLEFIISKmQNPR---I 290  Bacillus halo...
1XJK_A        239 N------------------------------------------------------------------------------- 239  Thermotoga ma...
CAD13723      208 T------------------------------------------------------------------------------- 208  Ralstonia sol...
AAQ66237      210 T------------------------------------------------------------------------------- 210  Porphyromonas...
CAD77768      316 Ahaliregydsnf--------------------------------------------------------------ngeay 333  Rhodopirellul...
CAA12167      262 Iralrdagfdmdl--------------------------------------------------------------ggddi 279  Streptomyces ...
WP_009610312  192 Q------------------------------------------------------------------------------- 192  Caldanaerobac...
WP_003114125  206 R------------------------------------------------------------------------------- 206  Pseudomonas a...
WP_010932265  263 Vasmvagskicsrflkaivdealkggtdrqenemlntliknalhrgvpmsyilrvlalveqgyttldfeeydthyeseay 342  Chlorobaculum...
WP_004082700      --------------------------------------------------------------------------------      Thermotoga ma...
WP_010898958  291 Lryllentdddqirklvkdklkftplsqleeamyqgivn----------yksipgmggfdakvikeaeeklriggtytvn 360  Bacillus halo...
1XJK_A        240 ------FFNLSVGFpmdKKEILKLYEEdGELELSHPRs------------------------------------T---IR 274  Thermotoga ma...
CAD13723      209 ------TFNVSVAV---TDAFMQAVADdAQWRLQHRAepsaqrraa-------------------gahlldnghW---CY 257  Ralstonia sol...
AAQ66237      211 ------GANVSVKI---DDEFMRAVVEgKPYKQQYPIdak-----------------------------------epkWE 246  Porphyromonas...
CAD77768      334 asvcfqNANLSVRL---TDDYMEAVRKnENFQTRWITdkptt------------------------------------ep 374  Rhodopirellul...
CAA12167      280 tsvqyqNANNSVRV---NDEFMRAVESgSAFGLRARMtgeii-------------------------------------- 318  Streptomyces ...
WP_009610312  193 ------QANLSVAV---SDAFMEAVAQdKMWKLEFPDtshpnydaewkg-------------dlnewkakgyptV---VY 247  Caldanaerobac...
WP_003114125  207 ------QFNLSLLI---TDQFMQAVEQdADWPLVFPVhvkerdeidlddpnavvwrewpiqddyvqradglvacK---VY 274  Pseudomonas a...
WP_010932265  343 qtvggqNSNNSVRV---TNEFMKAVQNdEMWVLRERTtgkea-------------------------------------- 381  Chlorobaculum...
WP_004082700  238 ----lnFFNLSVG---------------------FPMdkkeilklyeed------------------gelelshprstIR 274  Thermotoga ma...
WP_010898958  361 npdfltGANISVCL---TKEFMEAVDNdDWYALRFPDvenyteeemdiynre--------wsnvgdvreweergFpvkTY 429  Bacillus halo...
1XJK_A        275 KKVKIRELFRKIATNAWKSGDPGLAFLGEMN---KYypl-ypHRKINSTNPCGEIGLSDYEACNLGSIDVAKFYNNGF-- 348  Thermotoga ma...
CAD13723      258 ATVPARQLWDMLVEAAHHSAEPGLLFIDTIN---AAndl-aeLETIAATNPCGEQPLPAWGSCVLGPINLSRWIQHPFgv 333  Ralstonia sol...
AAQ66237      247 KEIDARTLWGKIIHNAWKSAEPGVLFWDTIIresVPdcyadlGFRTVSTNPCGEIPLCPYDSCRLLAINLYSYVKNPFts 326  Porphyromonas...
CAD77768      375 psyVAKELLNKMAECAWHCGDPGVQYDTTINkwht----cpnsGAINASNPCSEYMFLDDTACNLASINLMKFVQQDGs- 449  Rhodopirellul...
CAA12167      319 eqvdAKALFRKMAQAAWACADPGIQYDDTINrwht----cpesGRINGSNPCSEYMHLDNTSCNLASLNLMKFLTDDGeg 394  Streptomyces ...
WP_009610312  248 KEIPARELWNKIVTAAWESAEPGVVFLERYN---KLsnt-yyITKIISTNPCGELGLEPYGVCNLGAINLVAFVENg--- 320  Caldanaerobac...
WP_003114125  275 GQVRARHLWDMIMVSTYDYAEPGFILIDRVN---ELnnn-wwCEAIRATNPCGEQPLPPYGSCLLGSVNLTCFVEQPFgd 350  Pseudomonas a...
WP_010932265  382 ravrARDLWEKIVMSAWKCADPGLQFDSTINewht----cpksGRINASNPCSEYMFLDDTACNLASLNLAHFLDEETg- 456  Chlorobaculum...
WP_004082700  275 KKVKIRELFRKIATNAWKSGDPGLAFLGEMNkyyp----lypHRKINSTNPCGEIGLSDYEACNLGSIDVAKFYNNGf-- 348  Thermotoga ma...
WP_010898958  430 RMIRAKELWNLINICATYSAEPGIFFIDNAN---DMtnakayGQKVVATNPCGEQPLAPYSVCNLAAINLAEMANKQEk- 505  Bacillus halo...
1XJK_A        349 -----VDLEALQELVQIAVRFLDNVIDVN----------VFPIDKITKAVKESR--------------RLGLGIMGFADL 399  Thermotoga ma...
CAD13723      334 ggqpmFDFVSFGRAVHIQVRMLDNAIDIT----------RWPLIEHMREAHAKR--------------RIGVGVTGLADA 389  Ralstonia sol...
AAQ66237      327 e--asFDFELFRNHVVLAQRIMDDIIDLEaekieqilskIASDPESEEVKTSERnlwhkirrktlagrRTGVGITAEGDM 404  Porphyromonas...
CAD77768      450 -----FDHERFRAACRTFFIAQEILVDHA----------SYPTEPIARNSHKFR--------------PLGLGYSNLGSV 500  Rhodopirellul...
CAA12167      395 n--qsFDVERFAKVVELVITAMDISICFA----------DFPTQKIGENTRAFR--------------QLGIGYANLGAL 448  Streptomyces ...
WP_009610312  321 ----rINFEELEETVKIAVRFLDNVLDLG----------AYVLPQNKEMAQKLR--------------RVGLGLMGLADA 372  Caldanaerobac...
WP_003114125  351 e--arFDWDRFREVVRVFTRMLDNVVEIN----------GLPLEQQRQEILGKR--------------RHGMGFLGLGST 404  Pseudomonas a...
WP_010932265  457 ----kIKITELQHASALWTVVLEISVLMA----------HFPSKDIARLSYEFR--------------TLGLGFANLGRV 508  Chlorobaculum...
WP_004082700  349 -----VDLEALQELVQIAVRFLDNVIDVN----------VFPIDKITKAVKESR--------------RLGLGIMGFADL 399  Thermotoga ma...
WP_010898958  506 ----tVDFKKLKQTVEVGVRMQDNVIDAT----------PYFLEENTKQAKGER--------------RVGLGVMGLHDL 557  Bacillus halo...
1XJK_A        400 LYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISryrtednfvp-----------------famgm 462  Thermotoga ma...
CAD13723      390 LTMMGLPYQAPEARNLAVQIGRCLRDNAYAASAALAQERSPYPLFRAErslapg-------------------------- 443  Ralstonia sol...
AAQ66237      405 LAAMGFRYGSDEATQFAEEVQKTLALCAYSSSVTMAKERGAFELFDAKreennpfi-----------------------a 461  Porphyromonas...
CAD77768      501 IMTAGLPYDSDAARGMCGSLTALLHGEANRTSAELASVVGTFDGYVENeapmlrvmqmh----------------rdacd 564  Rhodopirellul...
CAA12167      449 LMATGHAYDSDGGRAIAGAISSLMTGTSYRRSAELAAVVGPYDGYARNaaphnqvmrqha--------------dandta 514  Streptomyces ...
WP_009610312  373 LILMNLRYGSEESLKATEEIVKRIRDAAYRASVELAKEKGPFPEFVADkylkg--------------------------- 425  Caldanaerobac...
WP_003114125  405 LTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDyevtaemlrkrpema--------adgykagdr 476  Pseudomonas a...
WP_010932265  509 LMVLGIPYDSPRALAIAGGIAAIMTGQAYVTSADMAKELGAFARYRENsddmlrvirnhsraarnsseeeyeglvvkprg 588  Chlorobaculum...
WP_004082700  400 LYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISryrtednfvp-----------------famgm 462  Thermotoga ma...
WP_010898958  558 LIYTETVYGSEEGNKLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQtdeetkqlrq-----------------rfigt 620  Bacillus halo...
1XJK_A        463 snyddEIREVMKMTk---------------EFRRNVALLTIAPTGSISNIA--D--TSSGLEPNFLLAYTRfvtkDD--- 520  Thermotoga ma...
CAD13723      444 hfvatLPGAVRETIa--------------rHGLRNSHLLSLAPTGSVSLAF--GgnCSSGIEPAFDWAYQR----RVrih 503  Ralstonia sol...
AAQ66237      462 rireadPWLYEEMKq---------------yGRRNIACLTIAPTGSTSLMT--Q--TSSGIEPVFMPVYKRrrkvNPsdk 522  Porphyromonas...
CAD77768      565 qinddGPAELKEAArelwdgv---leigekYGFRNAQATVLAPTGTISFMM--Dc-DTTGIEPDIALVKYKqlagGG--- 635  Rhodopirellul...
CAA12167      515 vrmddLDTPIWAAAtetwqdv---lrlgekNGFRNAQASVIAPTGTIGLAM--Sc-DTTGLEPDLALVKFKklvgGG--- 585  Streptomyces ...
WP_009610312  426 qfiqrLPKDIRDEIa--------------kYGIRNATILTQAPTGTTSILA--G--VSSGIEPNFAKEYVRkdrtGT--- 484  Caldanaerobac...
WP_003114125  477 irgsvLHAKYSRYMqrvaehapeliealaeTGARFTHHSSIAPTGTISLSLanN--ASNGIEPSFAHHYSRnlirEGrkt 554  Pseudomonas a...
WP_010932265  589 idseyCPKELFEAAgkvwdea---lkkgkkYGFRNAQVSVIAPTGTIGLVM--Dc-DTTGIEPEFAIVKFKklagGG--- 659  Chlorobaculum...
WP_004082700  463 snyddEIREVMKMTk---------------EFRRNVALLTIAPTGSISNIA--D--TSSGLEPNFLLAYTRfvt----ke 519  Thermotoga ma...
WP_010898958  621 gymkkMPEDIRQGVl--------------eYGIRNSHLLTVAPTGSTGTMV--G--VSTGLEPYFSFSYFR----SGrlg 678  Bacillus halo...
1XJK_A        521 -GTKEPLLYVNQVLREKLnpeilkrie----------------------------------------------------- 546  Thermotoga ma...
CAD13723      504 hGQPQLYRIENHAYRCFQa------------------------------------------------------------- 522  Ralstonia sol...
AAQ66237      523 nVQIDYVDEVGDSFEEFVvyhhnfvtwmrt-------------------------------------------------- 552  Porphyromonas...
CAD77768      636 -MLKIVNQTVKLGLKTLGydadtideil---------------------------------------------------- 662  Rhodopirellul...
CAA12167      586 -SMQIVNGTVPQALRRLGyqaeqieaiv---------------------------------------------------- 612  Streptomyces ...
WP_009610312  485 -------HTVKHWLADYPa------------------------------------------------------------- 496  Caldanaerobac...
WP_003114125  555 kEKVEVYSYELLAYRTLVn------------------------------------------------------------- 573  Pseudomonas a...
WP_010932265  660 -YFKIVNQSVHKALARLGysdkqieeiekyckghgtlrgcpginhqwlksrgftdekieavekqlesvfdirfafnkwii 738  Chlorobaculum...
WP_004082700  520 dGTKEPLLYVNQVLREKLnpeilkrie----------------------------------------------------- 546  Thermotoga ma...
WP_010898958  679 kFIEVKAEIVQEYLRAHPea------------------------------------------------------------ 698  Bacillus halo...
1XJK_A        547 -------------------------------------keliekgslKD------IPdvpEKIKKVFVVALDID------- 576  Thermotoga ma...
CAD13723      523 ---------------------------------------------mHG------EH---AVLPSYFVTANQVD------- 541  Ralstonia sol...
AAQ66237      553 -----------------------------------ngydpdrkytnEE------IDdlvARSPYYKATANDVD------- 584  Porphyromonas...
CAD77768      663 -------------------------------------kyvdandtiEG------APglqDEHLAVFDCAFKPAngvr-si 698  Rhodopirellul...
CAA12167      613 -------------------------------------ehiaehgnvLD------APglkTEHYKVFDCAMGers-----i 644  Streptomyces ...
WP_009610312  497 -----------------------------------------------------------------FVSAHEVT------- 504  Caldanaerobac...
WP_003114125  574 ----------------------------------------------AQalpdsdDPa--RRLPDYFITADSVT------- 598  Pseudomonas a...
WP_010932265  739 geefchslgfteeqlnepsfdmlselgateedieaandyvcgtmmiEG------APhlkPEHLPVFDCASTCGrkgkryi 812  Chlorobaculum...
WP_004082700  547 -------------------------------------keliekgslKD------IPdvpEKIKKVFVVALDID------- 576  Thermotoga ma...
WP_010898958  699 ---------------------------------------------------------deNHLPEWFISTMELA------- 714  Bacillus halo...
1XJK_A        577 -PMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGsLQTQVL 638  Thermotoga maritima
CAD13723      542 -GDDHLKMVAALQPFIDASISKTILISGGVSPAQVGALLFRAWQLRLKGITIFRPD-PASDEV 602  Ralstonia solanacearum GMI1000
AAQ66237      585 -WVAKVKMQGRIQQWVDHSISVTINLPSDVTEELVNTLYVEAWKSGCKGCTVYRDGsRSGVLI 646  Porphyromonas gingivalis W83
CAD77768      699 gWRAHITMMAAAQPFLSGAISKTVNMPTDVTPQDIADAYFWGWELGLKAIAIYRDGsKQSQPL 761  Rhodopirellula baltica SH 1
CAA12167      645 sAMGHVRMMAAIQPWISGALSKTVNMPESATVEEVEEIYFEAWKMGVKALAIYRDNcKVGQPL 707  Streptomyces clavuligerus ATCC...
WP_009610312  505 -PEEHVKMQAVLQKYIDSSISKTINLPRTATVDDIDNIYRLAYELGCKGITVYRDGsREGVLV 566  Caldanaerobacter subterraneus
WP_003114125  599 -PAQHMDIQAAAQKWVDSSISKTANVPTDYPFEDFKDIYRYAWHQGLKGCTTFRFNpEAFQGV 660  Pseudomonas aeruginosa
WP_010932265  813 nHMAHVRMMSAVQPFISGAISKTVNMPSSATTAEIGDVYEAAWQSMVKAITIYRDGsKLSQPL 875  Chlorobaculum tepidum
WP_004082700  577 -PMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGsLQTQVL 638  Thermotoga maritima
WP_010898958  715 -PEAHADVQCIIQRWVDSSLSKTVNAPRGYTVEQVQAVYERLYRGGAKGGTVYVDGsRDAQVl 776  Bacillus halodurans
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