2DNQ


Conserved Protein Domain Family
RRM1_RBM4

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cd12606: RRM1_RBM4 
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RNA recognition motif 1 (RRM1) found in vertebrate RNA-binding protein 4 (RBM4)
This subgroup corresponds to the RRM1 of RBM4, a ubiquitously expressed splicing factor that has two isoforms, RBM4A (also known as Lark homolog) and RBM4B (also known as RBM30), which are very similar in structure and sequence. RBM4 may function as a translational regulator of stress-associated mRNAs and also plays a role in micro-RNA-mediated gene regulation. RBM4 contains two N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), a CCHC-type zinc finger, and three alanine-rich regions within their C-terminal regions. The C-terminal region may be crucial for nuclear localization and protein-protein interaction. The RRMs, in combination with the C-terminal region, are responsible for the splicing function of RBM4.
Statistics
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PSSM-Id: 410018
Aligned: 5 rows
Threshold Bit Score: 128.772
Created: 19-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DNQ_A         9 VKLFIGNLPreaTEQEIRSLFEQYGKVLECDIIKNYGFVHIEDkTAAEDAIRNLHhyKLHGVNINVE 75  human
Q6IQ97         2 VKIFVGNLSpntTAEEIRSLFSQYGKISECDIVKNFGFVHMDSkSEADEAIQNLHhyMLNGMAMNVE 68  zebrafish
NP_001087983   2 VKLFVGNLPpeaTQPELKSLFEQFGRVTECDIIKNYGFVHMDDkKAADEAVRNLNhyKLHNVSINVE 68  African clawed frog
OXB51294       2 VKLFIGNLPreaTEQEIRSLFEQYGKVLECDIIKNYGFVHIEDkTAAEDAIRNLHhhKLHGVCINVE 68  scaled quail
XP_007884264   2 VKIFIGNLPrlaTREEIQELFEKYGKLTECDIIKNYGFVHMEDkSAADEAIKNLHhyTLHGVPINVE 68  elephant shark
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