1OZJ,1MHD


Conserved Protein Domain Family
MH1_SMAD_2_3

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cd10491: MH1_SMAD_2_3 
Click on image for an interactive view with Cn3D
N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3
The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 is found in SMAD2 as well as SMAD3. SMAD2 mediates the signal of the transforming growth factor (TGF)-beta, and thereby regulates multiple cellular processes, such as cell proliferation, apoptosis, and differentiation. It plays a role in the transmission of extracellular signals from ligands of the TGF-beta superfamily growth factors into the cell nucleus. SMAD3 modulates signals of activin and TGF-beta. It binds SMAD4, enabling its transmigration into the nucleus where it forms complexes with other proteins and acts as a transcription factor. Increased SMAD3 activity has been implicated in the pathogenesis of scleroderma.
Statistics
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PSSM-Id: 199815
Aligned: 14 rows
Threshold Bit Score: 232.42
Created: 29-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingZn binding site
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on human SMAD3-MH1 and other SMAD-MH1 domains with structure
  • Comment: MH1 binds to the major groove via a beta hairpin structure
  • Structure:1MHD: human SMAD3-MH1 binds DNA (a palindromic SMAD binding element, GTCTAGAC), contacts at 4.0A
  • Citation:PMID 9741623

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                            #   #                                #      
1OZJ_A         8 TPPIVKRLLGWKKgeq-----------ngQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRS------ 70  human
NP_001071817   5 TPPVVKELLGWKRgem-----------saQDEKFAEKAIKSLVKKLKKSGGLEDLKKAVTKQSIDTKCVKIPRS------ 67  Ciona intestinalis
Q9I9P9         8 TPPVVKRLLGWKKsasgssgaggggeqngQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNRNTKCVTIPSNcseiwg 87  zebrafish
NP_001079320   8 TPPIVKRLLGWKKgeq-----------ngQEEKWCEKAVKSLVKKLKKSGQLDELEKALTTQSISTKCITIPRS------ 70  African clawed ...
EFX84472       7 LSSPVKRLLGWKRg--------------eGEEKWSEKAVKSLVKKLKKSGGLDELEKAVTSQSSSTKCITIPRS------ 66  common water flea
1MHD_A         8 TPPIVKRLLGWKKgeq-----------ngQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRS------ 70  human
XP_002608052   8 TPPIVKRLLGWKKg--------------eGEDKWSEKAVKSLVKKLKKTCGLEELEKSITQQDPNTKCVTIPRS------ 67  Florida lancelet
XP_002402501   8 TPPVVKRLLGWKKg--------------eGEDKWSEKAVKSLVKKLKKSGGIDELEKSISTQDVHTKCITIPRS------ 67  black-legged tick
NP_001075435   9 TPPIVKRLLGWKKd--------------nSEDKWSEKAVKSLVKKLKKTGCLEELERAVTTQNSQTKCITIPRS------ 68  purple urchin
ABX57736       8 TPPIVKKLLGWKKge------------ssEVDKWSEKAVKSLVKKLKKTGGLDELEKAIRLQDSTTKCITIPRS------ 69  Pinctada fucata
Feature 1                                   #####  #                  ##                         
1OZJ_A        71 ------------------------LDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFnmKKDEVCVNPYH 126 human
NP_001071817  68 ------------------------LDGRLQVSHKKSLPHVLYCRLWRWPDLRNHHELRPVEKCEYAFqlKRDEVCVNPYH 123 Ciona intestinalis
Q9I9P9        88 lstpntieqwdtsglysypdqtrsLDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAIETCEYAFnlKKDEVCVNPYH 167 zebrafish
NP_001079320  71 ------------------------LDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMEVCEYAFsmKKDEVCVNPYH 126 African clawed ...
EFX84472      67 ------------------------LDGRLQVSQRKGLPHVIYCRLWRWPDLQTHHELHALENCEYAFqlKRDEVCVNPYH 122 common water flea
1MHD_A        71 ------------------------LDGRLQVSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFnmKKDEVCVNPYH 126 human
XP_002608052  68 ------------------------LDGRLQVSHRKGLPHVIYCRLWRWPDLQSHHELRALETCEYAFslKREEVCVNPYH 123 Florida lancelet
XP_002402501  68 ------------------------LDGRLQVSHRKGLPHVIYCRLWRWPDLQSHHELRATDNCQYAFnlKKDEVCINPYH 123 black-legged tick
NP_001075435  69 ------------------------LDGRLQVSHRKGLPHVIYCRLWRWPDLQSHHELKAVERCEYAFhlKKDEVCVNPYH 124 purple urchin
ABX57736      70 ------------------------LDGRLQVSHRKGLPHVIYCRLWRWPDLQNHQELRAIDSCEWAFhlKRDEVCVNPYH 125 Pinctada fucata
Feature 1              
1OZJ_A       127 YQRVET 132 human
NP_001071817 124 YTRVET 129 Ciona intestinalis
Q9I9P9       168 YQRVET 173 zebrafish
NP_001079320 127 YQRVET 132 African clawed frog
EFX84472     123 YQRVET 128 common water flea
1MHD_A       127 YQRVET 132 human
XP_002608052 124 YQRVET 129 Florida lancelet
XP_002402501 124 YQRVET 129 black-legged tick
NP_001075435 125 YARVET 130 purple urchin
ABX57736     126 YNRIEA 131 Pinctada fucata

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