1O0W,3N3W


Conserved Protein Domain Family
Rnc

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COG0571: Rnc 
dsRNA-specific ribonuclease [Transcription]
Statistics
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PSSM-Id: 440336
Aligned: 862 rows
Threshold Bit Score: 134.456
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1O0W_A        20 IVEE--FQKETGINFKNEELLFRALCHSSYANEQnqagrK--DVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLAR 95 
WP_099340286   6 KISD--VEKIIGVKFSNKKFLSQALVHKSFSNDN-----S----SNNEILEFLGDRVLGLVLAKKLINLYPNDKEGQLDK 74 
NP_207456     18 SYTT--LEKALGYSFKDKRLLEQALTHKSCK-----------LALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGKLSK 84 
WP_013756970   6 NLSK--LEEDLGYVFTNKKWLMTSLTHSSYSYNH-----P--EVKDFERLEFLGDAVLKLVVSHKLFVLYPEMSEGDMSK 76 
YP_002345004   3 NIEK--LEQSLTYEFKDKNLLIHALTHKSFKKS-----------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSK 69 
WP_013909111   4 NLED--LERALNFKFKNKDLLKSALTHKSYKISH-----KdiNWEDNERLEFLGDSVLNLCISLLLFQKFKEDREGALTQ 76 
WP_013695807   5 YLTK--VEKILNIKFKNTNFLEKALTHKSITKI---------SASNNERLEFIGDRVLGLVIATKLSILYPEDVEGSLDK 73 
WP_013136158   3 DYVN--LEKCLDYQFKNKDLIVEALTHKSFKKP-----------YNNERLEFLGDAVLNLIVGEYLYKKFPQSNEGDLSK 69 
WP_015902066   2 QISE--LEKSLGYQFKNKKLITEALTHRSYKKE-----------VNNERLEFLGDAVMDLIVGEYLFHLFPKAEEGILSK 68 
WP_051908722  35 QLQShpFEAFLDYKFSDPGLLQKASAPRS---------------QGFERLEFLGDRVLGLVIACLLYYSYPSAKVESLAQ 99 
1O0W_A        96 VKSAAASEEVLAMVSRKMNLGKFLFLGKG-EEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMK 174
WP_099340286  75 KLASLINKKVCAKVIEKYDLLKFISISKG-QKKIKT-GNLKILGDLCESLIGAIYIDRGFEVVEKFIFDLWKDQLKQSSE 152
NP_207456     85 LRASIVSAHGFTKLAKAIALQDYLRVSSS-EEISNGREKPSILSSAFEALMAGVYLEAGLAKVQKIMQNLLNRAYKRLDL 163
WP_013756970  77 LRAYLVSDKHLTKIAKKLNLQNYLLIGSS-ERTI----KDSILSASFEAILGAVYMDSSLKQCYKIIDKLMNIKIEEYE- 150
YP_002345004  70 LRAALVNEKSFAKIANSLNLGDFILMSVA-EENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDA 148
WP_013909111  77 KRAYLVCKNTLIKISKKLNLCDYIYLGKR-EEKLDKKSKENICARAMEALIGAIFLEGGFSTTFEKIKIWFSPYFVKFRQ 155
WP_013695807  74 KLASLVNKDTCSQIIEKLNLGKYILLSSS-QQKNKI-GHKKIYGDLCESLIGAVYLDKGFSEANKFVLSLWRENLKRSTI 151
WP_013136158  70 IRASLVNETGFTKLANEIKLGDYIYLSIA-EERNKGRTKASILSDAFESIMGAIYLESGLETLKPIILTLLEKSYDKINL 148
WP_015902066  69 LRAALVNEDSFTRLAKRLNLGKYLYLSPA-EENNNGREKPSILSSAFEAVIGAIYLEAGFEKAKDVALRLLKEEFPIITP 147
WP_051908722 100 LFGHLTSKKVLAEVYINLQVHPTLISSEFyKAPLAGPIAEKTASDIIEALLGAVYKDKGLGPSQECVKKLFSPYIEHGPK 179
1O0W_A       175 gEMLFD---YKTAL--------QEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIA 243
WP_099340286 153 --IKID---AKTKL--------QELSLKLYKELPKYKDLSTSGPAHKPIFKVSVNIKKSKSFIGEGSSKRNAEQKAAQSL 219
NP_207456    164 eHLFMD---YKTAL--------QELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQA 232
WP_013756970 151 ----ED---SKTVL--------QELTQSLFGVLPEYKVIDVRGPSHSPIFEVQLSIDNKFFYTATGSSKKQAQSEAAKKA 215
YP_002345004 149 kILIKD---YKTKL--------QEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIA 217
WP_013909111 156 -KKIKD---YKTQL--------QELAQKFYHKTPEYEILSVSGPSHNPKFEIGIKLNGEIITKAKGASKKEAELLAAKKA 223
WP_013695807 152 --VEVD---SKTQL--------QEYSLKFFKVLPIYKNLSNKGPSHKPSFKISVKITNSKLCTGEGTSKKKAEQLAASKL 218
WP_013136158 149 dVLFSD---YKTAL--------QEITQAEFGSIPDYKIEGSYGPDHKKEFEVSIWINNQCYGQAIGKSKKLAQQAVAKIA 217
WP_015902066 148 eELLKD---YKTTL--------QEITQAHFGVVPEYRLISASGPDHKKEFEIGVFIQDKEYARAKGKSKKTAQQEGARLT 216
WP_051908722 180 aKAISDfslPQQKLsfpdlgilQRRISYHFKNVMLLQAAFIHSSAHGRNFEILAFLGTRVLALGIAENAIDSNPVASEGL 259
1O0W_A       244 YEK--LLKe-R 251
WP_099340286 220 LDS--LDNe-- 226
NP_207456    233 LQK--LKEa-K 240
WP_013756970 216 LND--LRNi-R 223
YP_002345004 218 LEK--LGAl-- 224
WP_013909111 224 LKL--LTKk-V 231
WP_013695807 219 LKT--LNl--- 224
WP_013136158 218 LDK--LKG--- 223
WP_015902066 217 IDM--LKKelN 225
WP_051908722 260 LTEkfVEk-vN 269
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