2NZ7,2NSN


Conserved Protein Domain Family
CARD_NOD1_CARD4

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cd08324: CARD_NOD1_CARD4 
Click on image for an interactive view with Cn3D
Caspase activation and recruitment domain similar to that found in NOD1
Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Statistics
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PSSM-Id: 260035
Aligned: 5 rows
Threshold Bit Score: 145.696
Created: 16-Nov-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
homodimer
Conserved site includes 26 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:2NZ7; Homo sapiens Nod1 dimer; contacts at 4A
  • Comment:dimerization in Nod1 includes a swap of helices at the C-termini

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  ##  #### ### #   #                                        #  ## ########
2NZ7_A     13 QLLKSNRELLVTHIRNTQCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDL 92   human
2NSN_A      6 QLLKSNRELLVTHIRNTQCLVDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQLADAYVDL 85   human
XP_418777  26 ALLKVYRELLVSKIRHTQCLIDNLINNEYFSTEDAEIVVQFPTQADKVRKILDLVQSKGEEVSEYFICVLQKVTDAYYEL 105  chicken
ACX71752   12 KLLTSHRELLVEQVKNTQCILDNLQMNGFICTEDIETIQRSTTKTDQVRKILELVQSKGEDCSAYFTHILHEAYDAYIDL 91   grass carp
AFV53357   13 NILTYHRELLVSRLRSIQCILDNLLACGFICEEDVEIIQRTATKTGQVRKILELVQCKGEEACEFFIYIIYKVCDAYIDL 92   orange-spotted gr...
Feature 1     # ## 
2NZ7_A     93 RPWLL 97   human
2NSN_A     86 RPWLL 90   human
XP_418777 106 QPWLD 110  chicken
ACX71752   92 RPWFD 96   grass carp
AFV53357   93 QPWLK 97   orange-spotted grouper

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