2RC7,2RCA,2RC9


Conserved Protein Domain Family
PBP2_iGluR_NMDA_Nr3

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cd13720: PBP2_iGluR_NMDA_Nr3 
Click on image for an interactive view with Cn3D
The ligand-binding domain of the NR3 subunit of ionotropic NMDA (N-methyl-D-aspartate) glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily.
This group contains the ligand-binding domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in the treatment of chronic pain.
Statistics
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PSSM-Id: 270438
Aligned: 18 rows
Threshold Bit Score: 392.293
Created: 24-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingdimer interface
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on sequence similarity to Nr2a ligand-binding domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
2RC7_A       4 KLHLRVVTLIEHPFVFTRevdDEGLCPaGQLCLDpmtndssmldrlfs--------slhssndtvpikfkKCCYGYCIDL 75   Norway rat
EFN77985   525 MPVYRIVTALASPFTMVTe-lQEGFCLrGLTCRQgd--------------------------------tvACCYGLSMDL 571  Harpegnathos sal...
EFZ16607   530 MPIYRIVTALASPFTMVTs-lQEGFCG-GLTCQQgk--------------------------------tvVCCYGLSMDL 575  red fire ant
Q8VHN2     414 RPKLRVVTLVEHPFVFTResdEDGQCPaGQLCLDpgtndsarldalf----------aalvngsvprtlrRCCYGYCIDL 483  Norway rat
2RCA_B       4 RPKLRVVTLVEHPFVFTResdEDGQCPaGQLCLDpgtndsarldalf----------aalvngsvprtlrRCCYGYCIDL 73   Norway rat
Q91ZU9     414 RPKLRVVTLVEHPFVFTResdEDGQCPaGQLCLDpgtndsarldalf----------talengsvprtlrRCCYGYCIDL 483  house mouse
CAF95890   416 GHRLRVVTLVEHPFVFTRevdEDGMCPaGQLCLDprtnrsdviqglfnqlrnpnstapdwdgtdlpedlrKCCYGYCIDL 495  Tetraodon nigrov...
EAW69576   414 RPKLRVVTLLEHPFVFARdpdEDGQCPaGQLCLDpgtndsatldalf----------aalangsapralrKCCYGYCIDL 483  human
O60391     414 WPKLRVVTLLEHPFVFARdpdEDGQCPaGQLCLDpgtndsatldalf----------aalangsapralrKCCYGYCIDL 483  human
CAF93757   488 RRHMRVVTLVEHPFVFTRevdGDGLCPaGQLCLDpltnessvleklfh--------slgapnaslprdhrKCCYGYCIDL 559  spotted green pu...
Feature 1                                                       ###    #                       
2RC7_A      76 LEQLAEDMNFDFDLYIVGdgkyg--awknGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRG 153  Norway rat
EFN77985   572 LTLVARELGFRFNLYLAEdglfgkrngrnGTWNGVMGELVAGRAQLAFASISVSAHRAEVVDFTTPYYFSGVSFLTAPKL 651  Harpegnathos sal...
EFZ16607   576 LTLVARELGFRFNLYLVEdglfgkqnnrnGTWNGVMGELVSGRAQMSFAALSVSTHRAKVVEFSTPYYFSGVSFLTAPQL 655  red fire ant
Q8VHN2     484 LERLAEDLAFDFELYIVGdgkyg--alrdGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRD 561  Norway rat
2RCA_B      74 LERLAEDLAFDFELYIVGdgkyg--alrdGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRG 151  Norway rat
Q91ZU9     484 LERLAEDLAFDFELYIVGdgkyg--alrdGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRD 561  house mouse
CAF95890   496 LEKLAEDMGFTFDLYIVGdgkyg-alsgtGRWTGLVGDLLSGTADMAVTSFSINSARSRVIDFTSPFYSTSLGILVRSKD 574  Tetraodon nigrov...
EAW69576   484 LERLAEDTPFDFELYLVGdgkyg--alrdGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARD 561  human
O60391     484 LERLAEDTPFDFELYLVGdgkyg--alrdGRWTGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRARD 561  human
CAF93757   560 LEKLAEDMGFTFDLYIVGdgkyg--glknGRWTGLVGDLLSGSAHLAVTSFSINSARSQVIDFTSPFFSTSLGILVRTRD 637  spotted green pu...
Feature 1                                                                                      
2RC7_A     154 t------------------------------------------------------------------------------- 154  Norway rat
EFN77985   652 rseisllaflfpfspelwivmffslngtamavaifewvspfglnpwgrqrsknfslasalwvmwgllcghlvafkapksw 731  Harpegnathos sal...
EFZ16607   656 rseiplfaflfpfstelwiavftslnftaiavalyewfspfglnpwgrqrsknfsiasalwvmwgllcghlvafkapksw 735  red fire ant
Q8VHN2     562 taspigafmwplhwsmwvgvfaalhltalfltlyewrspygltprgrnrgtvfsyss-alnlcyailfgrtvssktpkcp 640  Norway rat
2RCA_B     152 t------------------------------------------------------------------------------- 152  Norway rat
Q91ZU9     562 taspigafmwplhwsmwvgvfaalhltalfltlyewrspygltprgrnrgtvfsyss-alnlcyailfgrtvssktpkcp 640  house mouse
CAF95890   575 taapigafmwplhwsmwvgifvtlhltalfltlyewnspfgmtphgrnrlrvfsyss-alnlcyailfgrtvatktpkcw 653  Tetraodon nigrov...
EAW69576   562 taspigafmwplhwstwlgvfaalhltalfltvyewrspygltprgrnrstvfsyss-alnlcyailfrrtvssktpkcp 640  human
O60391     562 taspigafmwplhwstwlgvfaalhltalfltvyewrspygltprgrnrstvfsyss-alnlcyailfrrtvssktpkcp 640  human
CAF93757   638 taapigafmrplhwsmwlgifvslhltavfltlyewhspfgltprgrnrervfslss-alsvcyailfgrtvavktpkcw 716  spotted green pu...
Feature 1                                                                                      
2RC7_A     155 -----------------------------------ELSGIHDPklhh--------------------------------- 166  Norway rat
EFN77985   732 pnkvliniwggfsvifvasytaniaaliaglffhlGGSNYHDKsl----------------------------------- 776  Harpegnathos sal...
EFZ16607   736 pnkfliniwggfsvifvasytaniaaliaglffhsSVSNYHDKsl----------------------------------- 780  red fire ant
Q8VHN2     641 tgrflmnlwaifcllvlssytanlaavmvgdktfeELSGIHDPklhh--------------------------------- 687  Norway rat
2RCA_B     153 -----------------------------------ELSGIHDPklhh--------------------------------- 164  Norway rat
Q91ZU9     641 tgrflmnlwaifcllvlssytanlaavmvgdktfeELSGIHDPklhh--------------------------------- 687  house mouse
CAF95890   654 tgrflmnlwaifcllvlssytanlaavmvgektfeQVSGIHDDkvrlkscrahtmhthageshtqtssfardyekadpps 733  Tetraodon nigrov...
EAW69576   641 tgrllmnlwaifcllvlssytanlaavmvgdktfeELSGIHDPklhh--------------------------------- 687  human
O60391     641 tgrllmnlwaifcllvlssytanlaavmvgdktfeELSGIHDPklhh--------------------------------- 687  human
CAF93757   717 tgrllmnlwaifclfclstytanlaavmvgektyeQLTGIHDPkra---------------------------------- 762  spotted green pu...
Feature 1                                                  ###                                 
2RC7_A     167 --------------------------------psqgFRFGTVRESSAEDYVRqsfpemheymrRYNVPATPDGVQYLKND 214  Norway rat
EFN77985   777 ----------------------------------lsQRVGAPRASAAEYYVQkanpqlwshmaRYSLSNVAEGVERLRNG 822  Harpegnathos sal...
EFZ16607   781 ----------------------------------lsQRVGAPRASAADYYVQkanpqlwshmaRYSLSNVAEGVERLRNG 826  red fire ant
Q8VHN2     688 --------------------------------psqgFRFGTVWESSAEAYIKasfpemhahmrRHSAPTTPHGVAMLTSD 735  Norway rat
2RCA_B     165 --------------------------------psqgFRFGTVWESSAEAYIKasfpemhahmrRHSAPTTPHGVAMLTSD 212  Norway rat
Q91ZU9     688 --------------------------------psqgFRFGTVWESSAEAYIKasfpemhahmrRHSAPTTPHGVAMLTSD 735  house mouse
CAF95890   734 plgvwsedvwsrtstvnpsslfrpvslpqlhhpslgFRFGTVRESSAEDYMKksfpemhdymrRYNQPTTPEGVHMLKTD 813  Tetraodon nigrov...
EAW69576   688 --------------------------------paqgFRFGTVWESSAEAYIKksfpdmhahmrRHSAPTTPRGVAMLTSD 735  human
O60391     688 --------------------------------paqgFRFGTVWESSAEAYIKksfpdmhahmrRHSAPTTPRGVAMLTSD 735  human
CAF93757   763 ----------------------------------vaEDYVKKSFPEMHEYMR-----------RYNVPATPDGIHQLKGD 797  spotted green pu...
Feature 1              ##                                                               
2RC7_A     215 peklDAFIMDKALLDYEVSIdadCKLLTVGkpFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWY 287  Norway rat
EFN77985   823 s--lDILIADTPILDYYRGIdggCRLQKIGdtINEDTYAIALTKGHPLKESMSKIIANYTSNGLLDAMQEKWY 893  Harpegnathos saltator
EFZ16607   827 s--lDILIADTPILDYYRATdngCRLQKIGdtINEDTYAIALTRGHPMKESISKVISNYTSNGMLDTLQEKWY 897  red fire ant
Q8VHN2     736 ppklNAFIMDKSLLDYEVSIdadCKLLTVGkpFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWY 808  Norway rat
2RCA_B     213 ppklNAFIMDKSLLDYEVSIdadCKLLTVGkpFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWY 285  Norway rat
Q91ZU9     736 ppklNAFIMDKSLLDYEVSIdadCKLLTVGkpFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWY 808  house mouse
CAF95890   814 pptlDAFIMDKALLDFEVSIdadCKLLTVGkpFAIEGYGIGLPQGSPLTRNVSEFVSRYKSDGFMDMLHDKWY 886  Tetraodon nigroviridis
EAW69576   736 ppklNAFIMDKSLLDYEVSIdadCKLLTVGkpFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWY 808  human
O60391     736 ppklNAFIMDKSLLDYEVSIdadCKLLTVGkpFAIEGYGIGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWY 808  human
CAF93757   798 pqrlDAFIMDKALLDYEVSIdadCKMLTVGkpFAIEGYGIGLPQNSPLTSNLSALVSQYKSDGFMDLLHDKWY 870  spotted green pufferfish

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