3DM1,2L11,3TZD


Conserved Protein Domain Family
CD_HP1gamma_Cbx3

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cd18652: CD_HP1gamma_Cbx3 
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chromodomain of heterochromatin protein 1 homolog gamma
CHRomatin Organization Modifier (chromo) domain of heterochromatin protein 1 homolog gamma (also known as HP1gamma, Cbx3, and Chromobox 3), and related proteins. HP1gamma is a highly conserved non-histone protein, which is a member of the heterochromatin protein family, and is enriched in the heterochromatin and associated with centromeres. HP1 has two conserved protein-protein interaction domains, a single N-terminal chromodomain (CD) which can bind to histone proteins via methylated lysine residues, and a related C-terminal chromo shadow domain (CSD) which is responsible for the homodimerization and interaction with a number of chromatin-associated non-histone proteins; a flexible hinge region separates the CD and CSD and may bind nucleic acid. In addition to being involved in transcriptional silencing in heterochromatin-like complexes, HP1gamma also binds lamin B receptor, an integral membrane protein found in the inner nuclear membrane. The dual binding functions of the protein may explain the association of heterochromatin with the inner nuclear membrane. HP1gamma is also recruited to sites of ultraviolet-induced DNA damage and double-strand breaks. HP1 is a highly conserved non-histone chromosomal protein that is evolutionarily conserved from fission yeast to plants and animals. There are three human homologs of HP1 proteins: HP1alpha (also known as Cbx5), HP1beta (also known as Cbx1), and HP1gamma.
Statistics
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PSSM-Id: 349299
Aligned: 7 rows
Threshold Bit Score: 95.8445
Created: 5-Dec-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide binding
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:3TZD; human CBX3 chromodomain binds methylated peptide from histone H1, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     ####                # #  #       ## #####  #      
3DM1_A      1 EFVVEKVLDRRVVnGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 50  human
2L11_A      2 EFVVEKVLDRRVVnGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 51  human
3TZD_A      6 EFVVEKVLDRRVVnGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN 55  human
AAI22268   18 EFVVEKVMDQRVVnGKVEFFLKWKGFTDADNTWEPEENLDCPELIAAFLE 67  zebrafish
AAH79995   19 EFVVEKVMDRRVVnGKVEYYLKWKGFTDSDNTWEPEENLDCPELIEAFLN 68  African clawed frog
P23198     29 EFVVEKVLDRRVVnGKVEYFLKWKGFTDADNTWEPEENLDCPELIEDFLN 78  house mouse
NP_989974  19 EFVVEKVLDRRVVnGKVEYYLKWKGFTDADNTWEPEENLDCPELIEAFLN 68  chicken

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