3FE2,4A4D


Conserved Protein Domain Family
DEADc_DDX5

?
cd18049: DEADc_DDX5 
Click on image for an interactive view with Cn3D
DEAD-box helicase domain of DEAD box protein 5
DDX5 (also called RNA helicase P68, HLR1, G17P1, or HUMP68) is involved in pathways that include the alteration of RNA structures, plays a role as a coregulator of transcription, a regulator of splicing, and in the processing of small noncoding RNAs. It synergizes with DDX17 and SRA1 RNA to activate MYOD1 transcriptional activity and is involved in skeletal muscle differentiation. Dysregulation of this gene may play a role in cancer development. DDX5 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
?
PSSM-Id: 350807
Aligned: 5 rows
Threshold Bit Score: 523.418
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
?
Program:
Drawing:
Aligned Rows:
 
ATP bindingDEAD box
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3FE2; Homo sapiens DDX5 with bound ATP, contacts at 4A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                # ###  #                 ########    
3FE2_A      6 QEVETYRRSkEITVRGhnCPKPVLNFYEANFPaNVMDVIARQNFTEPTaIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85  human
4A4D_A     20 QEVETYRRSkEITVRGhnCPKPVLNFYEANFPaNVMDVIARQNFTEPTaIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 99  human
NP_990158  59 QEVEQYRSSkEVTVRGhnCPKPIINFYEANFPaNVMEVIQRQNFTEPTaIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 138 chicken
NP_989229  69 QECDQYRRSkEITVRGlnCPKPVLQFHEASFPaNLMEVVKRQNFTDPTpIQGQGWPVALSGLDMVGVAMTGSGKTLSYLL 148 tropical clawed frog
NP_997777  73 QEVEHYRRSkEITVKGrdGPKPIVKFHEANFPkYVMDVITKQNWTDPTpIQAQGWPVALSGKDMVGIAQTGSGKTLSYLL 152 zebrafish
Feature 1                                                                                     
3FE2_A     86 PAIVHINHQPFleRGDGPICLVLAPTRELAQQVQQVAAEYcracrLKSTCIYGGapKGPQIRDLERGVEICIATPGRLID 165 human
4A4D_A    100 PAIVHINHQPFleRGDGPICLVLAPTRELAQQVQQVAAEYcracrLKSTCIYGGapKGPQIRDLERGVEICIATPGRLID 179 human
NP_990158 139 PAIVHINHQPFleRGDGPICLVLAPTRELAQQVQQVAAEYsracrLKSTCIYGGapKGPQIRDLERGVEICIATPGRLID 218 chicken
NP_989229 149 PGIVHINHQPFlqRGDGPILLVLAPTRELAQQVQQVAAEYgracrLRSTCIYGGapKGPQIRDLERGVEICIATPGRLID 228 tropical clawed frog
NP_997777 153 PAIVHINHQPFleHGDGPICLVLAPTRELAQQVQQVAAEYgkasrIKSTCIYGGapQGPQIRDLERGVEICIATPGRLID 232 zebrafish
Feature 1                                                                               
3FE2_A    166 FLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 human
4A4D_A    180 FLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 253 human
NP_990158 219 FLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA 292 chicken
NP_989229 229 FLEAGKTNLNRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYVHINIGA 302 tropical clawed frog
NP_997777 233 FLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGA 306 zebrafish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap