1NWQ,1HJB


Conserved Protein Domain Family
bZIP_CEBP

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cd14693: bZIP_CEBP 
Click on image for an interactive view with Cn3D
Basic leucine zipper (bZIP) domain of CCAAT/enhancer-binding protein (CEBP) and similar proteins: a DNA-binding and dimerization domain
CEBPs (or C/EBPs) are Basic leucine zipper (bZIP) transcription factors that regulate the cell cycle, differentiation, growth, survival, energy metabolism, innate and adaptive immunity, and inflammation, among others. They are also associated with cancer and viral disease. There are six CEBP proteins in mammalian cells including CEBPA (alpha), CEBPB (beta), CEBPG (gamma), CEBPD (delta), and CEBPE (epsilon), which all contain highly conserved bZIP domains at their C-termini and variations at their N-terminal regions. Each possesses unique properties to regulate cell type-specific growth and differentiation. The sixth isoform, CEBPZ (zeta), lacks an intact DNA-binding domain and is excluded from this subfamily. bZIP factors act in networks of homo and heterodimers in the regulation of a diverse set of cellular processes. The bZIP structural motif contains a basic region and a leucine zipper, composed of alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization of leucine zippers creates a pair of the adjacent basic regions that bind DNA and undergo conformational change. Dimerization occurs in a specific and predictable manner resulting in hundreds of dimers having unique effects on transcription.
Statistics
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PSSM-Id: 269841
Aligned: 30 rows
Threshold Bit Score: 62.9598
Created: 13-Jun-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1NWQ: Rattus norvegicus CEBPalpha bZIP domain homodimer binds DNA; contacts at 4A.
  • Structure:1HJB: Human CEBPbeta bZIP domain homodimer binds DNA fragment from CSF-1R promoter; contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            ## ## ### ###### # # #                                  
1NWQ_A         3 NSNEYRVRRERNNIAVRKSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRG 62  Norway rat
EKC24061     241 DTEEYLIKRAKNNIAIRKCREKAKKKQEEMDDKMRQLENENSALRQQVDDLKAEVSRLKG 300 Pacific oyster
EKC24062     179 GTREYFEKRARNNLAIRKCREKAKLKQVEMENRLQYLESENMQLKGKLDNVTKQLELLKD 238 Pacific oyster
NP_001191392 259 GTQEYVDKRARNNVAVRKSRAKAKEKQRETEGRVKSLLDQNDQLQKKVDLLSKELNVLKG 318 California sea hare
XP_002738933 187 NSEEYRHRREKNNVAVRRSREKSKVKQKEVQNKVSQLQDENDKLQKKVELLTKELTVLKS 246 Saccoglossus kowalevskii
XP_004209260  51 SDEEYSRKRARNNVAVKKSREKAKNRIVETQVRVEQLSQENEELQTKVTLLTKELNVLRA 110 green hydra
NP_001071988 243 GSKEYVQKRERNNVAVRRSRDKAKRKAAETQVKVDQLQNENLKLHEKVAELTHELTTLKN 302 Ciona intestinalis
ELU14768       7 GTEEYKQRRERNNVAVRKSRDKTKRQQIETQQKVQELSNENDRLQKKVDLLSKELSVLKG 66  Capitella sp. I Grassle & Grassle, ...
EDV24138      10 YSDEYRRKRERNNEAVRKSRKKTKLKSMETQERVMQLSMENEELKTKLSLLTKELSVLKS 69  Trichoplax adhaerens
ESO83083       1 GTIEYNEKRERNNVAVRKSRAKAKNRQQDNERRMCELQMENERLNERLETITKELVVLKG 60  owl limpet

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