1ZZI,1J5K,1KHM


Conserved Protein Domain Family
KH-I_HNRNPK_rpt3

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cd22434: KH-I_HNRNPK_rpt3 
third type I K homology (KH) RNA-binding domain found in heterogeneous nuclear ribonucleoprotein K (hnRNP K) and similar proteins
hnRNP K, also called transformation up-regulated nuclear protein (TUNP), is a pre-mRNA binding protein that binds tenaciously to poly(C) sequences. It may be involved in the nuclear metabolism of hnRNAs, particularly for pre-mRNAs that contain cytidine-rich sequences. It can also bind poly(C) single-stranded DNA. hnRNP K plays an important role in p53/TP53 response to DNA damage, acting at the level of both transcription activation and repression. hnRNP K contains three K-homology (KH) RNA-binding domains. The model corresponds to the third one.
Statistics
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PSSM-Id: 411862
Aligned: 23 rows
Threshold Bit Score: 98.5455
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingGXXG motif
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1ZZI: Homo sapiens hnRNP K binds ssDNA; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     ## #####  ##  #       ## #       #                        ## 
1ZZI_A         6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPleGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79  human
AAN71427     242 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPlpNSNDRIITISGTPKQIQMAQYLLQQRLVSQSE 315 fruit fly
EDO37243     343 QTSTQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDPlpGSNDRIITITGNQEQINHAQYLLQQSVRQHSG 416 starlet sea anemone
EDV21025      21 PATVQVSIPKDLAGSIIGKGGTRIRDVRERSGAMIKIDDArpGEDYRVITISGGKDQIDEAHGLLQDCVRQYSG 94  Trichoplax adhaerens
XP_026693785 280 QKTTQVTIPTSCAASVIGKTGQRIRQIREDSGAVIVIDEAgpGEEERVISITGNEEQTQNAQFLLQKNAEEPKD 353 vase tunicate
EFX66209     306 TETTQVSIPKDLAGAIIGKGGARIRKIRGDSGASITIDEPrpGSTERIITISGSSHQIWKAQYLLQQSVRENSQ 379 common water flea
XP_002602052 407 ITSTQVTIPKELAGSIIGRGGSRIRTIRERSEAQIKIDEPlpGSTDRIITISGDNDQIRNAQFLLQESCSVNLG 480 Florida lancelet
XP_781909    368 SQSQQVTIPNDLAGSIIGRGGQRIKRIRMQSGAQIKIDDPlsGAKDRIITITGTQHDIAHAKFLLQNSVKEYQN 441 purple sea urchin
NP_740869    316 VTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSn-GQPERIITIKGTEQQIHSAQYLLQQCVRNSTQ 388 Caenorhabditis elegans
PVD19517     754 TETTQVTIPKEMAGAIIGKGGARITEIRRRSGAQIVIDEAlpGSNERIISITGTPEQIQNAQYMLQLSVKQQSD 827 Pomacea canaliculata

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