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NM_170707.4(LMNA):c.1968+1G>A AND Hutchinson-Gilford syndrome

Germline classification:
Pathogenic (2 submissions)
Last evaluated:
Aug 1, 2015
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000015607.41

Allele description [Variation Report for NM_170707.4(LMNA):c.1968+1G>A]

NM_170707.4(LMNA):c.1968+1G>A

Gene:
LMNA:lamin A/C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q22
Genomic location:
Preferred name:
NM_170707.4(LMNA):c.1968+1G>A
HGVS:
  • NC_000001.11:g.156138758G>A
  • NG_008692.2:g.61186G>A
  • NM_001257374.3:c.1632+1G>A
  • NM_001282626.2:c.1818+151G>A
  • NM_001406983.1:c.1968+1G>A
  • NM_001406985.1:c.1968+1G>A
  • NM_001406986.1:c.1725+1G>A
  • NM_001406987.1:c.1725+1G>A
  • NM_001406988.1:c.1671+1G>A
  • NM_001406989.1:c.1632+1G>A
  • NM_001406990.1:c.1410+1G>A
  • NM_001406991.1:c.1968+1G>A
  • NM_001406993.1:c.1410+1G>A
  • NM_001406994.1:c.1344+1G>A
  • NM_001406995.1:c.1410+1G>A
  • NM_001406996.1:c.1410+1G>A
  • NM_001406997.1:c.1410+1G>A
  • NM_001406999.1:c.1344+1G>A
  • NM_001407000.1:c.1344+1G>A
  • NM_001407001.1:c.1344+1G>A
  • NM_170707.4:c.1968+1G>AMANE SELECT
  • NM_170708.4:c.1878+1G>A
  • LRG_254t2:c.1968+1G>A
  • LRG_254:g.61186G>A
  • NC_000001.10:g.156108549G>A
  • NM_170707.2:c.1968+1G>A
Nucleotide change:
IVS11, G-A, +1
Links:
OMIM: 150330.0036; dbSNP: rs113436208
NCBI 1000 Genomes Browser:
rs113436208
Molecular consequence:
  • NM_001282626.2:c.1818+151G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001257374.3:c.1632+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406983.1:c.1968+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406985.1:c.1968+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406986.1:c.1725+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406987.1:c.1725+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406988.1:c.1671+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406989.1:c.1632+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406990.1:c.1410+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406991.1:c.1968+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406993.1:c.1410+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406994.1:c.1344+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406995.1:c.1410+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406996.1:c.1410+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406997.1:c.1410+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001406999.1:c.1344+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001407000.1:c.1344+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001407001.1:c.1344+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_170707.4:c.1968+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_170708.4:c.1878+1G>A - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Hutchinson-Gilford syndrome (HGPS)
Synonyms:
Progerin-producing progeroid laminopathy
Identifiers:
MONDO: MONDO:0008310; MedGen: C0033300; Orphanet: 740; OMIM: 176670

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000035872OMIM
no assertion criteria provided
Pathogenic
(Aug 1, 2015)
germlineliterature only

PubMed (3)
[See all records that cite these PMIDs]

SCV000196622GeneReviews
no classification provided
not providedde novoliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novounknownnot providednot providednot providednot providednot providedliterature only
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Nothing to display

See all PubMed Citations (3)

Details of each submission

From OMIM, SCV000035872.6

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (3)

Description

Restrictive Dermopathy 2

In a premature infant (P1) who died at 6 months of age due to restrictive dermopathy (RSDM2; 619793), Navarro et al. (2004) identified a heterozygous G-to-A transition at position 1 in the intron 11 donor site of the LMNA gene (IVS11+1G-A), resulting in loss of exon 11 from the transcript. The patient expressed lamins A and C and a truncated prelamin A. Patient cells showed an abnormal transcript with an in-frame deletion of the entire exon 11 (270 bp), predicted to cause an internal deletion of 90 residues corresponding to a large part of the globular domain (Gly567_Gln656del).

Barthelemy et al. (2015) analyzed LMNA exon 11 transcripts in cells derived from the patient reported by Navarro et al. (2004). In addition to production of a normal full-length prelamin A transcript, there was a band corresponding to prelamin A(del50) (progerin), and an additional transcript correlation to prelamin A(del90) resulting from the skipping of all of exon 11. The prelamin A(del90) transcript was termed 'dermopathin.'

Hutchinson-Guilford Progeria Syndrome

In a patient with an extremely severe form of Hutchinson-Guilford progeria syndrome (HGPS; 176670), Moulson et al. (2007) identified a heterozygous G-to-A transition at the +1 position of the donor splice site of intron 11 in the LMNA gene (1968+1G-A). RT-PCR studies showed a truncated protein product identical to that observed in HGPS cell lines with the common 1824C-T mutation (150330.0022), indicating that the new mutation resulted in the abnormal use of the same cryptic exon 11 splice site. The findings were in contrast to those reported by Navarro et al. (2004), who observed skipping of exon 11 with 1968+1G-A. Further quantitative studies of the patient's cells by Moulson et al. (2007) found a 4.5-fold increase in the relative ratio of mutant mRNA and protein to wildtype prelamin A compared to typical HGPS cells. The findings were confirmed by Western blot analysis and provided an explanation for the severe phenotype observed in this patient. He had had abnormally thick and tight skin observed at 11 weeks of age, and developed more typical but severe progeroid features over time. He died of infection at age 3.5 years.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

From GeneReviews, SCV000196622.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novounknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 18, 2024