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NM_002188.3(IL13):c.431A>G (p.Gln144Arg) AND Inherited susceptibility to asthma

Germline classification:
risk factor (1 submission)
Last evaluated:
Mar 1, 2005
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000015785.13

Allele description [Variation Report for NM_002188.3(IL13):c.431A>G (p.Gln144Arg)]

NM_002188.3(IL13):c.431A>G (p.Gln144Arg)

Gene:
IL13:interleukin 13 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q31.1
Genomic location:
Preferred name:
NM_002188.3(IL13):c.431A>G (p.Gln144Arg)
Other names:
R130Q
HGVS:
  • NC_000005.10:g.132660272A>G
  • NG_012090.1:g.7100A>G
  • NM_001354991.2:c.236A>G
  • NM_001354992.2:c.236A>G
  • NM_001354993.2:c.236A>G
  • NM_002188.2:c.431A>G
  • NM_002188.3:c.431A>GMANE SELECT
  • NP_001341920.1:p.Gln79Arg
  • NP_001341921.1:p.Gln79Arg
  • NP_001341922.1:p.Gln79Arg
  • NP_002179.2:p.Gln144Arg
  • NC_000005.9:g.131995964A>G
Protein change:
Q144R; ARG130GLN
Links:
OMIM: 147683.0002; dbSNP: rs20541
NCBI 1000 Genomes Browser:
rs20541
Molecular consequence:
  • NM_001354991.2:c.236A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354992.2:c.236A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354993.2:c.236A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002188.3:c.431A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inherited susceptibility to asthma
Synonyms:
ASTHMA, BRONCHIAL; ASTHMA-RELATED TRAITS, SUSCEPTIBILITY TO; Asthma, susceptibility to
Identifiers:
MONDO: MONDO:0010940; MedGen: C1869116; OMIM: 600807

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000036052OMIM
no assertion criteria provided
risk factor
(Mar 1, 2005)
germlineliterature only

PubMed (5)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Genetic variants of IL-13 signalling and human asthma and atopy.

Heinzmann A, Mao XQ, Akaiwa M, Kreomer RT, Gao PS, Ohshima K, Umeshita R, Abe Y, Braun S, Yamashita T, Roberts MH, Sugimoto R, Arima K, Arinobu Y, Yu B, Kruse S, Enomoto T, Dake Y, Kawai M, Shimazu S, Sasaki S, Adra CN, et al.

Hum Mol Genet. 2000 Mar 1;9(4):549-59.

PubMed [citation]
PMID:
10699178

Functional effect of the R110Q IL13 genetic variant alone and in combination with IL4RA genetic variants.

Chen W, Ericksen MB, Levin LS, Khurana Hershey GK.

J Allergy Clin Immunol. 2004 Sep;114(3):553-60.

PubMed [citation]
PMID:
15356556
See all PubMed Citations (5)

Details of each submission

From OMIM, SCV000036052.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (5)

Description

Heinzmann et al. (2000) determined that R130Q variant of IL13, which they referred to as R110Q, associated with asthma in case-control populations from Britain and Japan (peak odds ratio (OR) = 2.31, 95% confidence interval, 1.33 - 4.00); the variant also predicted asthma and higher serum IL13 levels in a general, Japanese pediatric population. Chen et al. (2004) noted that R110Q numbering does not include a 20-amino acid signal sequence and that the R110Q variant has been referred to as R130Q. Immunohistochemistry demonstrated that both subunits of IL13R are prominently expressed in bronchial epithelium and smooth muscle from asthmatic subjects. Detailed molecular modeling analyses indicated that residue 110 of IL13 is important in the internal constitution of the ligand and crucial in ligand-receptor interaction.

In Chinese adult patients with allergic rhinitis (607154), Wang et al. (2003) found a significant association of the IL13 arg130-to-gln (R130Q) SNP, but not of the IL13 promoter -1112C-T SNP (147683.0001), with serum total IgE levels. Patients with a gln/gln genotype showed much higher serum total IgE than those with an arg/arg genotype.

Hiromatsu et al. (2005) noted that the R130Q amino acid substitution arises from a G-to-A transition at nucleotide 2044 (G2044A) in exon 4 of the IL13 gene.

Vladich et al. (2005) examined the impact of the IL13 R130Q variant on the functional properties of IL13 by comparing the activity of the variant to wildtype IL13 on primary effector cells of human allergic inflammation. IL13 R130Q was significantly more active than wildtype IL13 in multiple effector assays and was neutralized less effectively by an IL13R-alpha-2 decoy. Vladich et al. (2005) suggested that natural variation in the coding region of IL13 may be an important genetic determinant of susceptibility to allergy.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 18, 2024