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NM_020975.6(RET):c.2543T>A (p.Met848Lys) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 13, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000034772.2

Allele description [Variation Report for NM_020975.6(RET):c.2543T>A (p.Met848Lys)]

NM_020975.6(RET):c.2543T>A (p.Met848Lys)

Gene:
RET:ret proto-oncogene [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
10q11.21
Genomic location:
Preferred name:
NM_020975.6(RET):c.2543T>A (p.Met848Lys)
HGVS:
  • NC_000010.11:g.43119681T>A
  • NG_007489.1:g.47613T>A
  • NM_000323.2:c.2543T>A
  • NM_001355216.2:c.1781T>A
  • NM_001406743.1:c.2543T>A
  • NM_001406744.1:c.2543T>A
  • NM_001406759.1:c.2543T>A
  • NM_001406760.1:c.2543T>A
  • NM_001406761.1:c.2414T>A
  • NM_001406762.1:c.2414T>A
  • NM_001406763.1:c.2408T>A
  • NM_001406764.1:c.2414T>A
  • NM_001406765.1:c.2408T>A
  • NM_001406766.1:c.2255T>A
  • NM_001406767.1:c.2255T>A
  • NM_001406768.1:c.2279T>A
  • NM_001406769.1:c.2147T>A
  • NM_001406770.1:c.2255T>A
  • NM_001406771.1:c.2105T>A
  • NM_001406772.1:c.2147T>A
  • NM_001406773.1:c.2105T>A
  • NM_001406774.1:c.2018T>A
  • NM_001406775.1:c.1817T>A
  • NM_001406776.1:c.1817T>A
  • NM_001406777.1:c.1817T>A
  • NM_001406778.1:c.1817T>A
  • NM_001406779.1:c.1646T>A
  • NM_001406780.1:c.1646T>A
  • NM_001406781.1:c.1646T>A
  • NM_001406782.1:c.1646T>A
  • NM_001406783.1:c.1517T>A
  • NM_001406784.1:c.1553T>A
  • NM_001406785.1:c.1526T>A
  • NM_001406786.1:c.1517T>A
  • NM_001406787.1:c.1511T>A
  • NM_001406788.1:c.1358T>A
  • NM_001406789.1:c.1358T>A
  • NM_001406790.1:c.1358T>A
  • NM_001406791.1:c.1238T>A
  • NM_001406792.1:c.1094T>A
  • NM_001406793.1:c.1094T>A
  • NM_001406794.1:c.1094T>A
  • NM_020629.2:c.2543T>A
  • NM_020630.7:c.2543T>A
  • NM_020975.6:c.2543T>AMANE SELECT
  • NP_000314.1:p.Met848Lys
  • NP_001342145.1:p.Met594Lys
  • NP_001342145.1:p.Met594Lys
  • NP_001393672.1:p.Met848Lys
  • NP_001393673.1:p.Met848Lys
  • NP_001393688.1:p.Met848Lys
  • NP_001393689.1:p.Met848Lys
  • NP_001393690.1:p.Met805Lys
  • NP_001393691.1:p.Met805Lys
  • NP_001393692.1:p.Met803Lys
  • NP_001393693.1:p.Met805Lys
  • NP_001393694.1:p.Met803Lys
  • NP_001393695.1:p.Met752Lys
  • NP_001393696.1:p.Met752Lys
  • NP_001393697.1:p.Met760Lys
  • NP_001393698.1:p.Met716Lys
  • NP_001393699.1:p.Met752Lys
  • NP_001393700.1:p.Met702Lys
  • NP_001393701.1:p.Met716Lys
  • NP_001393702.1:p.Met702Lys
  • NP_001393703.1:p.Met673Lys
  • NP_001393704.1:p.Met606Lys
  • NP_001393705.1:p.Met606Lys
  • NP_001393706.1:p.Met606Lys
  • NP_001393707.1:p.Met606Lys
  • NP_001393708.1:p.Met549Lys
  • NP_001393709.1:p.Met549Lys
  • NP_001393710.1:p.Met549Lys
  • NP_001393711.1:p.Met549Lys
  • NP_001393712.1:p.Met506Lys
  • NP_001393713.1:p.Met518Lys
  • NP_001393714.1:p.Met509Lys
  • NP_001393715.1:p.Met506Lys
  • NP_001393716.1:p.Met504Lys
  • NP_001393717.1:p.Met453Lys
  • NP_001393718.1:p.Met453Lys
  • NP_001393719.1:p.Met453Lys
  • NP_001393720.1:p.Met413Lys
  • NP_001393721.1:p.Met365Lys
  • NP_001393722.1:p.Met365Lys
  • NP_001393723.1:p.Met365Lys
  • NP_065680.1:p.Met848Lys
  • NP_065681.1:p.Met848Lys
  • NP_065681.1:p.Met848Lys
  • NP_065681.1:p.Met848Lys
  • NP_066124.1:p.Met848Lys
  • NP_066124.1:p.Met848Lys
  • LRG_518t1:c.2543T>A
  • LRG_518t2:c.2543T>A
  • LRG_518:g.47613T>A
  • LRG_518p1:p.Met848Lys
  • LRG_518p2:p.Met848Lys
  • NC_000010.10:g.43615129T>A
  • NM_001355216.1:c.1781T>A
  • NM_020630.4:c.2543T>A
  • NM_020630.6:c.2543T>A
  • NM_020975.4:c.2543T>A
Protein change:
M365K
Links:
dbSNP: rs201101792
NCBI 1000 Genomes Browser:
rs201101792
Molecular consequence:
  • NM_000323.2:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001355216.2:c.1781T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406743.1:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406744.1:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406759.1:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406760.1:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406761.1:c.2414T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406762.1:c.2414T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406763.1:c.2408T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406764.1:c.2414T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406765.1:c.2408T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406766.1:c.2255T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406767.1:c.2255T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406768.1:c.2279T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406769.1:c.2147T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406770.1:c.2255T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406771.1:c.2105T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406772.1:c.2147T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406773.1:c.2105T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406774.1:c.2018T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406775.1:c.1817T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406776.1:c.1817T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406777.1:c.1817T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406778.1:c.1817T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406779.1:c.1646T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406780.1:c.1646T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406781.1:c.1646T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406782.1:c.1646T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406783.1:c.1517T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406784.1:c.1553T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406785.1:c.1526T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406786.1:c.1517T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406787.1:c.1511T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406788.1:c.1358T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406789.1:c.1358T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406790.1:c.1358T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406791.1:c.1238T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406792.1:c.1094T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406793.1:c.1094T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406794.1:c.1094T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020629.2:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020630.7:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_020975.6:c.2543T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000043477Biesecker Lab/Clinical Genomics Section, National Institutes of Health - ClinSeq
no assertion criteria provided
variant of unknown significance
(Jul 13, 2012) 		germlineresearch

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineno1not providednot provided572not providedresearch

Citations

PubMed

Secondary variants in individuals undergoing exome sequencing: screening of 572 individuals identifies high-penetrance mutations in cancer-susceptibility genes.

Johnston JJ, Rubinstein WS, Facio FM, Ng D, Singh LN, Teer JK, Mullikin JC, Biesecker LG.

Am J Hum Genet. 2012 Jul 13;91(1):97-108. doi: 10.1016/j.ajhg.2012.05.021. Epub 2012 Jun 14.

PubMed [citation]
PMID:
22703879
PMCID:
PMC3397257

Details of each submission

From Biesecker Lab/Clinical Genomics Section, National Institutes of Health - ClinSeq, SCV000043477.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)

Description

The study set was not selected for affection status in relation to any cancer. Pathogenicity categories were based on literature curation. See PubMed ID:22703879 for details.

Description

Converted during submission to Uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineno572not provideddiscovery1not providednot providednot provided

Last Updated: Sep 29, 2024