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NM_002024.6(FMR1):c.433G>T (p.Ala145Ser) AND not specified

Germline classification:
Benign (2 submissions)
Last evaluated:
Mar 26, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000117089.16

Allele description [Variation Report for NM_002024.6(FMR1):c.433G>T (p.Ala145Ser)]

NM_002024.6(FMR1):c.433G>T (p.Ala145Ser)

Gene:
FMR1:fragile X messenger ribonucleoprotein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq27.3
Genomic location:
Preferred name:
NM_002024.6(FMR1):c.433G>T (p.Ala145Ser)
HGVS:
  • NC_000023.11:g.147929961G>T
  • NG_007529.2:g.22971G>T
  • NM_001185075.2:c.433G>T
  • NM_001185076.2:c.433G>T
  • NM_001185081.2:c.433G>T
  • NM_001185082.2:c.433G>T
  • NM_002024.6:c.433G>TMANE SELECT
  • NP_001172004.1:p.Ala145Ser
  • NP_001172005.1:p.Ala145Ser
  • NP_001172010.1:p.Ala145Ser
  • NP_001172011.1:p.Ala145Ser
  • NP_002015.1:p.Ala145Ser
  • NP_002015.1:p.Ala145Ser
  • LRG_762t1:c.433G>T
  • LRG_762:g.22971G>T
  • LRG_762p1:p.Ala145Ser
  • NC_000023.10:g.147011480G>T
  • NM_002024.5:c.433G>T
  • NR_033699.2:n.694G>T
  • NR_033700.2:n.694G>T
  • Q06787:p.Ala145Ser
Protein change:
A145S
Links:
UniProtKB: Q06787#VAR_029278; dbSNP: rs29281
NCBI 1000 Genomes Browser:
rs29281
Molecular consequence:
  • NM_001185075.2:c.433G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001185076.2:c.433G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001185081.2:c.433G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001185082.2:c.433G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002024.6:c.433G>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_033699.2:n.694G>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_033700.2:n.694G>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
Observations:
6

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000151231Genetic Services Laboratory, University of Chicago
no assertion criteria provided
Likely benigngermlineclinical testing

SCV000854783Eurofins Ntd Llc (ga)
criteria provided, single submitter

(EGL ClinVar v180209 classification definitions)
Benign
(Mar 26, 2018)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknown6not providednot providednot providednot providedclinical testing

Details of each submission

From Genetic Services Laboratory, University of Chicago, SCV000151231.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Likely benign based on allele frequency in 1000 Genomes Project or ESP global frequency and its presence in a patient with a rare or unrelated disease phenotype. NOT Sanger confirmed.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

From Eurofins Ntd Llc (ga), SCV000854783.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided6not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot provided6not providednot providednot provided

Last Updated: Nov 18, 2024