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GRCh38/hg38 16p13.3(chr16:64296-135757)x3 AND See cases

Germline classification:
Benign (1 submission)
Last evaluated:
Jan 30, 2010
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000133856.6

Allele description [Variation Report for GRCh38/hg38 16p13.3(chr16:64296-135757)x3]

GRCh38/hg38 16p13.3(chr16:64296-135757)x3

Genes:
  • LOC130058086:ATAC-STARR-seq lymphoblastoid active region 10199 [Gene]
  • LOC130058089:ATAC-STARR-seq lymphoblastoid active region 10200 [Gene]
  • LOC130058087:ATAC-STARR-seq lymphoblastoid silent region 6899 [Gene]
  • LOC130058088:ATAC-STARR-seq lymphoblastoid silent region 6901 [Gene]
  • MPG:N-methylpurine DNA glycosylase [Gene - OMIM - HGNC]
  • NPRL3:NPR3 like, GATOR1 complex subunit [Gene - OMIM - HGNC]
  • LOC121530606:Sharpr-MPRA regulatory region 13767 [Gene]
  • HBA-LCR:alpha-globin locus control region [Gene]
  • RHBDF1:rhomboid 5 homolog 1 [Gene - OMIM - HGNC]
Variant type:
copy number gain
Cytogenetic location:
16p13.3
Genomic location:
Preferred name:
GRCh38/hg38 16p13.3(chr16:64296-135757)x3
HGVS:
  • NC_000016.10:g.(?_64296)_(135757_?)dup
  • NC_000016.8:g.(?_54294)_(125756_?)dup
  • NC_000016.9:g.(?_114294)_(185756_?)dup
Links:
dbVar: nssv576855; dbVar: nsv491938
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000173273ISCA site 4

See additional submitters

no assertion criteria provided
Benign
(Jan 30, 2010) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA site 4, SCV000173273.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: May 7, 2024