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GRCh38/hg38 4q35.2(chr4:186625270-190018185)x1 AND See cases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Apr 30, 2011
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000141423.3

Allele description [Variation Report for GRCh38/hg38 4q35.2(chr4:186625270-190018185)x1]

GRCh38/hg38 4q35.2(chr4:186625270-190018185)x1

Genes:
  • LOC126807257:BRD4-independent group 4 enhancer GRCh37_chr4:187855925-187857124 [Gene]
  • LOC126807261:BRD4-independent group 4 enhancer GRCh37_chr4:188523188-188524387 [Gene]
  • LOC126807270:BRD4-independent group 4 enhancer GRCh37_chr4:189406194-189407393 [Gene]
  • LOC126807271:BRD4-independent group 4 enhancer GRCh37_chr4:189655173-189656372 [Gene]
  • LOC126807273:BRD4-independent group 4 enhancer GRCh37_chr4:189979694-189980893 [Gene]
  • LOC126807274:BRD4-independent group 4 enhancer GRCh37_chr4:190229364-190230563 [Gene]
  • LOC126807275:BRD4-independent group 4 enhancer GRCh37_chr4:190471799-190472998 [Gene]
  • LOC126807277:BRD4-independent group 4 enhancer GRCh37_chr4:190606699-190607898 [Gene]
  • LOC126807278:BRD4-independent group 4 enhancer GRCh37_chr4:190608412-190609611 [Gene]
  • LOC126088085:BRD4-independent group 4 enhancer GRCh37_chr4:190615457-190616656 [Gene]
  • LOC126807279:BRD4-independent group 4 enhancer GRCh37_chr4:190802184-190803383 [Gene]
  • LOC126807258:CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:187880187-187881386 [Gene]
  • LOC126807262:CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:188592460-188593659 [Gene]
  • LOC126807276:CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:190523074-190524273 [Gene]
  • FAT1:FAT atypical cadherin 1 [Gene - OMIM - HGNC]
  • FRG1-DT:FRG1 divergent transcript [Gene - HGNC]
  • FRG1:FSHD region gene 1 [Gene - OMIM - HGNC]
  • LOC126807256:MED14-independent group 3 enhancer GRCh37_chr4:187841344-187842543 [Gene]
  • LOC126807259:MED14-independent group 3 enhancer GRCh37_chr4:187885109-187886308 [Gene]
  • LOC126807260:MED14-independent group 3 enhancer GRCh37_chr4:188049269-188050468 [Gene]
  • LOC126807264:MED14-independent group 3 enhancer GRCh37_chr4:188784615-188785814 [Gene]
  • LOC126807265:MED14-independent group 3 enhancer GRCh37_chr4:189047967-189049166 [Gene]
  • LOC129389253:MPRA-validated peak5158 silencer [Gene]
  • LOC132089107:Neanderthal introgressed variant-containing enhancer experimental_76895 [Gene]
  • LOC132089108:Neanderthal introgressed variant-containing enhancer experimental_76925 [Gene]
  • LOC132089109:Neanderthal introgressed variant-containing enhancer experimental_77155 [Gene]
  • LOC132089110:Neanderthal introgressed variant-containing enhancer experimental_77214 [Gene]
  • LOC126807263:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:188665573-188666772 [Gene]
  • LOC126807266:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189080404-189081603 [Gene]
  • LOC126807267:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189326005-189327204 [Gene]
  • LOC126807268:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189365717-189366916 [Gene]
  • LOC126807269:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189369247-189370446 [Gene]
  • LOC126807272:P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:189862417-189863616 [Gene]
  • LOC123493255:Sharpr-MPRA regulatory region 15710 [Gene]
  • LOC121725196:Sharpr-MPRA regulatory region 4557 [Gene]
  • LOC123493254:Sharpr-MPRA regulatory region 651 [Gene]
  • LOC121056755:Sharpr-MPRA regulatory region 7889 [Gene]
  • ZFP42:ZFP42 zinc finger protein [Gene - OMIM - HGNC]
  • LINC01060:long intergenic non-protein coding RNA 1060 [Gene - HGNC]
  • LINC01262:long intergenic non-protein coding RNA 1262 [Gene - HGNC]
  • LINC01596:long intergenic non-protein coding RNA 1596 [Gene - HGNC]
  • LINC02374:long intergenic non-protein coding RNA 2374 [Gene - HGNC]
  • LINC02434:long intergenic non-protein coding RNA 2434 [Gene - HGNC]
  • LINC02492:long intergenic non-protein coding RNA 2492 [Gene - HGNC]
  • LINC02508:long intergenic non-protein coding RNA 2508 [Gene - HGNC]
  • LINC02514:long intergenic non-protein coding RNA 2514 [Gene - HGNC]
  • LINC02515:long intergenic non-protein coding RNA 2515 [Gene - HGNC]
  • TRIML1:tripartite motif family like 1 [Gene - HGNC]
  • TRIML2:tripartite motif family like 2 [Gene - OMIM - HGNC]
  • LOC101930028:uncharacterized LOC101930028 [Gene]
  • LOC105377603:uncharacterized LOC105377603 [Gene]
  • LOC339975:uncharacterized LOC339975 [Gene]
Variant type:
copy number loss
Cytogenetic location:
4q35.2
Genomic location:
Preferred name:
GRCh38/hg38 4q35.2(chr4:186625270-190018185)x1
HGVS:
  • NC_000004.12:g.(?_186625270)_(190018185_?)del
  • NC_000004.10:g.(?_187783418)_(191176334_?)del
  • NC_000004.11:g.(?_187546424)_(190939340_?)del
Links:
dbVar: nssv3396588; dbVar: nsv993536
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000182338GeneDx
no assertion criteria provided
Pathogenic
(Apr 30, 2011) 		not providedclinical testing

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000182338.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1not providedyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: Oct 14, 2023