ClinVar

GRCh38/hg38 Yq11.21-12(chrY:10624004-57190586)x0

Genes:

• LOC106128902:AZFa HERV15yq1 recombination region [Gene]
• LOC108004538:AZFa HERV15yq2 recombination region [Gene]
• LOC106144557:AZFb P1.2 recombination region [Gene]
• LOC108868752:AZFb P4.1 recombination region [Gene]
• LOC106144556:AZFb P5.1 recombination region [Gene]
• LOC108863624:AZFb P5.2 recombination region [Gene]
• LOC106144558:AZFc P1.1 recombination region [Gene]
• LOC108868753:AZFc P1.1b recombination region [Gene]
• LOC126057109:BRD4-independent group 4 enhancer GRCh37_chrY:22253264-22254463 [Gene]
• LOC126057110:BRD4-independent group 4 enhancer GRCh37_chrY:22277369-22278568 [Gene]
• LOC126057111:BRD4-independent group 4 enhancer GRCh37_chrY:22280323-22281522 [Gene]
• LOC126057112:BRD4-independent group 4 enhancer GRCh37_chrY:22299473-22300672 [Gene]
• LOC126057113:BRD4-independent group 4 enhancer GRCh37_chrY:22316202-22317401 [Gene]
• DDX3Y:DEAD-box helicase 3 Y-linked [Gene - OMIM - HGNC]
• LOC106144610:IR4 Yq recombination region [Gene]
• LOC126057107:MED14-independent group 3 enhancer GRCh37_chrY:16452370-16453569 [Gene]
• LOC126057108:MED14-independent group 3 enhancer GRCh37_chrY:19155795-19156994 [Gene]
• LOC126057114:MED14-independent group 3 enhancer GRCh37_chrY:22339850-22341049 [Gene]
• NLGN4Y-AS1:NLGN4Y antisense RNA 1 [Gene - HGNC]
• PRORY:PRORY Y-linked lncRNA [Gene - HGNC]
• PRY2:PTPN13 like Y-linked 2 [Gene - OMIM - HGNC]
• PRY:PTPN13 like Y-linked [Gene - OMIM - HGNC]
• RBMY1A1:RNA binding motif protein Y-linked family 1 member A1 [Gene - OMIM - HGNC]
• RBMY1B:RNA binding motif protein Y-linked family 1 member B [Gene - HGNC]
• RBMY1D:RNA binding motif protein Y-linked family 1 member D [Gene - HGNC]
• RBMY1E:RNA binding motif protein Y-linked family 1 member E [Gene - HGNC]
• RBMY1F:RNA binding motif protein Y-linked family 1 member F [Gene - HGNC]
• RBMY1J:RNA binding motif protein Y-linked family 1 member J [Gene - HGNC]
• BPY2:basic charge Y-linked 2 [Gene - OMIM - HGNC]
• BPY2B:basic charge Y-linked 2B [Gene - HGNC]
• BPY2C:basic charge Y-linked 2C [Gene - HGNC]
• CDY1:chromodomain Y-linked 1 [Gene - OMIM - HGNC]
• CDY1B:chromodomain Y-linked 1B [Gene - HGNC]
• CDY2A:chromodomain Y-linked 2A [Gene - OMIM - HGNC]
• CDY2B:chromodomain Y-linked 2B [Gene - HGNC]
• DAZ1:deleted in azoospermia 1 [Gene - OMIM - HGNC]
• DAZ2:deleted in azoospermia 2 [Gene - OMIM - HGNC]
• DAZ3:deleted in azoospermia 3 [Gene - OMIM - HGNC]
• DAZ4:deleted in azoospermia 4 [Gene - OMIM - HGNC]
• EIF1AY:eukaryotic translation initiation factor 1A Y-linked [Gene - OMIM - HGNC]
• FAM197Y10:family with sequence similarity 197 Y-linked member 10 [Gene - HGNC]
• FAM224A:family with sequence similarity 224 member A [Gene - HGNC]
• FAM224B:family with sequence similarity 224 member B [Gene - HGNC]
• FAM41AY1:family with sequence similarity 41 member A, Y-linked 1 [Gene - HGNC]
• FAM41AY2:family with sequence similarity 41 member A, Y-linked 2 [Gene - HGNC]
• HSFY1:heat shock transcription factor Y-linked 1 [Gene - OMIM - HGNC]
• HSFY2:heat shock transcription factor Y-linked 2 [Gene - HGNC]
• IL9R:interleukin 9 receptor [Gene - OMIM - HGNC]
• KDM5D:lysine demethylase 5D [Gene - OMIM - HGNC]
• LOC107522039:meiotic recombination hotspot PAR2 [Gene]
• LOC107838685:meiotic recombination hotspot PAR2A [Gene]
• MIR12120:microRNA 12120 [Gene - HGNC]
• NLGN4Y:neuroligin 4 Y-linked [Gene - OMIM - HGNC]
• RPS4Y2:ribosomal protein S4 Y-linked 2 [Gene - OMIM - HGNC]
• SPRY3:sprouty RTK signaling antagonist 3 [Gene - OMIM - HGNC]
• TTTY10:testis expressed transcript, Y-linked 10 [Gene - HGNC]
• TTTY13:testis expressed transcript, Y-linked 13 [Gene - HGNC]
• TTTY14:testis expressed transcript, Y-linked 14 [Gene - HGNC]
• TTTY15:testis expressed transcript, Y-linked 15 [Gene - HGNC]
• TTTY17A:testis expressed transcript, Y-linked 17A [Gene - OMIM - HGNC]
• TTTY17B:testis expressed transcript, Y-linked 17B [Gene - HGNC]
• TTTY17C:testis expressed transcript, Y-linked 17C [Gene - HGNC]
• TTTY3:testis expressed transcript, Y-linked 3 [Gene - OMIM - HGNC]
• TTTY3B:testis expressed transcript, Y-linked 3B [Gene - HGNC]
• TTTY4:testis expressed transcript, Y-linked 4 [Gene - OMIM - HGNC]
• TTTY4B:testis expressed transcript, Y-linked 4B [Gene - HGNC]
• TTTY4C:testis expressed transcript, Y-linked 4C [Gene - HGNC]
• TTTY5:testis expressed transcript, Y-linked 5 [Gene - OMIM - HGNC]
• TTTY6:testis expressed transcript, Y-linked 6 [Gene - OMIM - HGNC]
• TTTY6B:testis expressed transcript, Y-linked 6B [Gene - HGNC]
• TTTY9A:testis expressed transcript, Y-linked 9A [Gene - HGNC]
• TTTY9B:testis expressed transcript, Y-linked 9B [Gene - HGNC]
• TMSB4Y:thymosin beta 4 Y-linked [Gene - OMIM - HGNC]
• USP9Y:ubiquitin specific peptidase 9 Y-linked [Gene - OMIM - HGNC]
• UTY:ubiquitously transcribed tetratricopeptide repeat containing, Y-linked [Gene - OMIM - HGNC]
• LOC101929148:uncharacterized LOC101929148 [Gene]
• VCY1B:variable charge Y-linked 1B [Gene - OMIM - HGNC]
• VCY:variable charge Y-linked [Gene - OMIM - HGNC]
• VAMP7:vesicle associated membrane protein 7 [Gene - OMIM - HGNC]

Variant type:

copy number loss

Cytogenetic location:

Yq11.21-12

Genomic location:

• ChrY: 10624004 - 57190586 (on Assembly GRCh38)
• ChrY: 13134518 - 59336737 (on Assembly GRCh37)
• ChrY: 11244518 - 57746125 (on Assembly NCBI36)

Preferred name:

GRCh38/hg38 Yq11.21-12(chrY:10624004-57190586)x0

HGVS:

• NC_000024.10:g.(?_10624004)_(57190586_?)del
• NC_000024.8:g.(?_11244518)_(57746125_?)del
• NC_000024.9:g.(?_13134518)_(59336737_?)del

This HGVS expression did not pass validation

Links:

dbVar: nssv3396985; dbVar: nsv995407

Observations:

1