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NM_001317778.2(SFTPC):c.201+14G>A AND not specified

Germline classification:
Benign (1 submission)
Last evaluated:
Feb 21, 2013
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000151855.4

Allele description [Variation Report for NM_001317778.2(SFTPC):c.201+14G>A]

NM_001317778.2(SFTPC):c.201+14G>A

Genes:
BMP1:bone morphogenetic protein 1 [Gene - OMIM - HGNC]
SFTPC:surfactant protein C [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
8p21.3
Genomic location:
Preferred name:
NM_001317778.2(SFTPC):c.201+14G>A
HGVS:
  • NC_000008.11:g.22162746G>A
  • NG_016968.1:g.6076G>A
  • NG_029659.1:g.2607G>A
  • NM_001172357.2:c.201+14G>A
  • NM_001172410.2:c.201+14G>A
  • NM_001317778.2:c.201+14G>AMANE SELECT
  • NM_001317779.2:c.43-334G>A
  • NM_001317780.2:c.201+14G>A
  • NM_003018.4:c.201+14G>A
  • NC_000008.10:g.22020259G>A
  • NM_001172357.1:c.201+14G>A
  • NM_003018.3:c.201+14G>A
Links:
dbSNP: rs8192327
NCBI 1000 Genomes Browser:
rs8192327
Molecular consequence:
  • NM_001172357.2:c.201+14G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001172410.2:c.201+14G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001317778.2:c.201+14G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001317779.2:c.43-334G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001317780.2:c.201+14G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_003018.4:c.201+14G>A - intron variant - [Sequence Ontology: SO:0001627]
Observations:
13

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000200332Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine
criteria provided, single submitter

(LMM Criteria)
Benign
(Feb 21, 2013)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot provided1313not providednot providednot providedclinical testing

Citations

PubMed

A systematic approach to assessing the clinical significance of genetic variants.

Duzkale H, Shen J, McLaughlin H, Alfares A, Kelly MA, Pugh TJ, Funke BH, Rehm HL, Lebo MS.

Clin Genet. 2013 Nov;84(5):453-63. doi: 10.1111/cge.12257.

PubMed [citation]
PMID:
24033266
PMCID:
PMC3995020

Details of each submission

From Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine, SCV000200332.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided13not providednot providedclinical testing PubMed (1)

Description

201+14G>A in intron 2 of SFTPC: This variant is not expected to have clinical si gnificance because it is not located within the conserved splice consensus seque nce. It has been identified in 5.7% (486/8512) of European American chromosomes from a broad population by the NHLBI Exome Sequencing Project (http://evs.gs.was hington.edu/EVS; dbSNP rs8192327).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot provided13not provided13not provided

Last Updated: Mar 5, 2024