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NM_000432.4(MYL2):c.496G>T (p.Asp166Tyr) AND not provided

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jul 29, 2015
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000158935.2

Allele description [Variation Report for NM_000432.4(MYL2):c.496G>T (p.Asp166Tyr)]

NM_000432.4(MYL2):c.496G>T (p.Asp166Tyr)

Gene:
MYL2:myosin light chain 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.11
Genomic location:
Preferred name:
NM_000432.4(MYL2):c.496G>T (p.Asp166Tyr)
Other names:
p.D166Y:GAC>TAC
HGVS:
  • NC_000012.12:g.110911082C>A
  • NG_007554.1:g.14496G>T
  • NM_000432.4:c.496G>TMANE SELECT
  • NP_000423.2:p.Asp166Tyr
  • NP_000423.2:p.Asp166Tyr
  • LRG_393t1:c.496G>T
  • LRG_393:g.14496G>T
  • LRG_393p1:p.Asp166Tyr
  • NC_000012.11:g.111348886C>A
  • NM_000432.3:c.496G>T
Protein change:
D166Y
Links:
dbSNP: rs730880952
NCBI 1000 Genomes Browser:
rs730880952
Molecular consequence:
  • NM_000432.4:c.496G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000208870GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Likely pathogenic
(Jul 29, 2015)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000208870.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Asp166Tyr (GAC>TAC): c.496 G>T in exon 7 of the MYL2 gene (NM_000432.3); While the D166Y mutation in the MYL2 gene has not been reported to our knowledge, a mutation affecting this same residue, (D166V) has been reported in one individual with HCM, was absent in 200 control chromosomes and co-segregated with disease (Richard et al., 2003). Additionally, functional studies have shown that D166V alters myosin cross-bridge kinetics, increases calcium sensitivity, decreases maximal contractile force development and slows rates of force relaxation in myocardium (Kerrick et al., 2009; Wang et al., 2013). Furthermore, a mutation in a nearby residue (G162R) has been reported in association with HCM, further supporting the functional importance of this residue and this region of the protein. D166Y results in a non-conservative amino acid substitution at a position that is conserved among vertebrates. In silico analysis predicts D166Y is damaging to the protein structure/function. D166Y was also not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. In summary, D166Y in the MYL2 gene is interpreted as a likely disease-causing mutation. The variant is found in HCM panel(s).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 26, 2023