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NM_005902.4(SMAD3):c.17C>T (p.Pro6Leu) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 9, 2014
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000197181.1

Allele description [Variation Report for NM_005902.4(SMAD3):c.17C>T (p.Pro6Leu)]

NM_005902.4(SMAD3):c.17C>T (p.Pro6Leu)

Genes:
LOC130057352:ATAC-STARR-seq lymphoblastoid silent region 6574 [Gene]
SMAD3:SMAD family member 3 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q22.33
Genomic location:
Preferred name:
NM_005902.4(SMAD3):c.17C>T (p.Pro6Leu)
Other names:
p.P6L:CCT>CTT
HGVS:
  • NC_000015.10:g.67066171C>T
  • NG_011990.1:g.5315C>T
  • NM_005902.4:c.17C>TMANE SELECT
  • NP_005893.1:p.Pro6Leu
  • NC_000015.9:g.67358509C>T
  • NM_005902.3:c.17C>T
Protein change:
P6L
Links:
dbSNP: rs863223749
NCBI 1000 Genomes Browser:
rs863223749
Molecular consequence:
  • NM_005902.4:c.17C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000250773GeneDx
criteria provided, single submitter

(GeneDx Variant Classification (06012015))
Uncertain significance
(Feb 9, 2014)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000250773.11

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

p.Pro6Leu (CCT>CTT): c.17 C>T in exon 1 of the SMAD3 gene (NM_005902.3). The P6L variant in the SMAD3 gene has not been reported as a disease-causing mutation nor as a benign polymorphism to our knowledge. P6L was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The P6L variant is located at a position that is conserved across species, and in silico analysis predicts P6L is damaging to the protein structure/function. The P6L variant is a semi-conservative amino acid substitution as these residues share similar properties, but differ in size, charge, or other properties which may impact secondary structure. However, no missense mutations have been reported in nearby residues, indicating this region of the protein may tolerate change. With the clinical and molecular information available at this time, we cannot definitively determine if P6L is a disease-causing mutation or a rare benign variant. This variant was found in TAAD

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 14, 2023