NM_014625.4(NPHS2):c.87C>G (p.Ala29=) AND not specified

Germline classification:: Benign (1 submission)
Last evaluated:: Oct 4, 2016
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000253074.8

Allele description [Variation Report for NM_014625.4(NPHS2):c.87C>G (p.Ala29=)]

NM_014625.4(NPHS2):c.87C>G (p.Ala29=)

Gene:

NPHS2:NPHS2 stomatin family member, podocin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q25.2

Genomic location:

Preferred name:

NM_014625.4(NPHS2):c.87C>G (p.Ala29=)

HGVS:

NC_000001.11:g.179575778G>C
NG_007535.1:g.5172C>G
NM_001297575.2:c.87C>G
NM_014625.4:c.87C>GMANE SELECT
NP_001284504.1:p.Ala29=
NP_055440.1:p.Ala29=
NP_055440.1:p.Ala29=
LRG_887t1:c.87C>G
LRG_887:g.5172C>G
LRG_887p1:p.Ala29=
NC_000001.10:g.179544913G>C
NM_014625.2:c.87C>G
NM_014625.3:c.87C>G

Links:

dbSNP: rs12123397

NCBI 1000 Genomes Browser:

rs12123397

Molecular consequence:

NM_001297575.2:c.87C>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_014625.4:c.87C>G - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000614354	Athena Diagnostics	criteria provided, single submitter (Athena Diagnostics Criteria)	Benign (Oct 4, 2016)	germline	clinical testing	PubMed (2) [See all records that cite these PMIDs] 15968559, 26467025

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000614354

Athena Diagnostics

criteria provided, single submitter

(Athena Diagnostics Criteria)

Benign
(Oct 4, 2016)

germline

clinical testing

PubMed (2)
[See all records that cite these PMIDs]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Clinical features and outcome of childhood minimal change nephrotic syndrome: is genetics involved?

Lahdenkari AT, Suvanto M, Kajantie E, Koskimies O, Kestilä M, Jalanko H.

Pediatr Nephrol. 2005 Aug;20(8):1073-80. Epub 2005 Jun 21.

PubMed [citation]

PMID:: 15968559

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Details of each submission

From Athena Diagnostics, SCV000614354.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (2)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 4, 2024

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