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NM_002332.3(LRP1):c.3734A>G (p.Lys1245Arg) AND Keratosis pilaris

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Mar 4, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000258847.8

Allele description [Variation Report for NM_002332.3(LRP1):c.3734A>G (p.Lys1245Arg)]

NM_002332.3(LRP1):c.3734A>G (p.Lys1245Arg)

Gene:
LRP1:LDL receptor related protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q13.3
Genomic location:
Preferred name:
NM_002332.3(LRP1):c.3734A>G (p.Lys1245Arg)
HGVS:
  • NC_000012.12:g.57175646A>G
  • NG_016444.1:g.52148A>G
  • NM_002332.3:c.3734A>GMANE SELECT
  • NP_002323.2:p.Lys1245Arg
  • NC_000012.11:g.57569429A>G
  • NM_002332.2:c.3734A>G
Protein change:
K1245R; LYS1245ARG
Links:
OMIM: 107770.0002; dbSNP: rs483353013
NCBI 1000 Genomes Browser:
rs483353013
Molecular consequence:
  • NM_002332.3:c.3734A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Keratosis pilaris
Synonyms:
Hyperkeratosis pilaris
Identifiers:
MONDO: MONDO:0021036; MedGen: C0263383; Orphanet: 3406; Human Phenotype Ontology: HP:0032152

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000328565OMIM
no assertion criteria provided
Pathogenic
(Mar 4, 2024)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Nothing to display

Details of each submission

From OMIM, SCV000328565.8

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In 4 affected children from a consanguineous Pakistani family with a mixed type of keratosis pilaris atrophicans (KPA; 604093), Klar et al. (2015) identified homozygosity for a c.3734A-G transition (c.3734A-G, NM_002332.2) in exon 23 of the LRP1 gene, resulting in a lys1245-to-arg (K1245R) substitution at a highly conserved residue within the sixth epidermal growth factor (EGF)-like domain. The mutation segregated fully with disease in the family and was not found in 200 Swedish or 200 Pakistani control chromosomes, in 900 in-house exomes, or in the dbSNP, EVS, ESP, or ExAC databases. Analysis of mRNA from patient fibroblast cultures showed a 5-fold reduction in LRP1 mRNA compared to age-matched controls; immunostaining and fluorescence confocal microscopy confirmed significantly reduced LRP1 levels in patient cells compared to controls. In addition, there was a marked reduction in cellular uptake of the known LRP1 ligand A2M (103950) in patient fibroblasts compared to controls, and intracellular A2M levels were reduced beyond what would be expected from the LRP1 levels (p = 0.0017) compared to controls, suggesting that binding properties of LRP1 to A2M were altered in the patients.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024