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NM_174878.3(CLRN1):c.619C>T (p.Arg207Ter) AND Usher syndrome type 3

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 2, 2016
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000408993.2

Allele description [Variation Report for NM_174878.3(CLRN1):c.619C>T (p.Arg207Ter)]

NM_174878.3(CLRN1):c.619C>T (p.Arg207Ter)

Gene:
CLRN1:clarin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q25.1
Genomic location:
Preferred name:
NM_174878.3(CLRN1):c.619C>T (p.Arg207Ter)
HGVS:
  • NC_000003.12:g.150928016G>A
  • NG_009168.1:g.49984C>T
  • NM_001195794.1:c.658C>T
  • NM_001256819.2:c.*233C>T
  • NM_052995.2:c.342+49C>T
  • NM_174878.3:c.619C>TMANE SELECT
  • NP_001182723.1:p.Arg220Ter
  • NP_777367.1:p.Arg207Ter
  • LRG_700t1:c.658C>T
  • LRG_700t2:c.342+49C>T
  • LRG_700:g.49984C>T
  • LRG_700p1:p.Arg220Ter
  • NC_000003.11:g.150645803G>A
  • NM_174878.2:c.619C>T
  • NR_046380.3:n.828C>T
Protein change:
R207*
Links:
dbSNP: rs373208120
NCBI 1000 Genomes Browser:
rs373208120
Molecular consequence:
  • NM_001256819.2:c.*233C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_052995.2:c.342+49C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NR_046380.3:n.828C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001195794.1:c.658C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_174878.3:c.619C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Usher syndrome type 3
Synonyms:
Usher Syndrome, Type III
Identifiers:
MONDO: MONDO:0016485; MedGen: C1568248

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000487254Counsyl
criteria provided, single submitter

(Counsyl Autosomal and X-linked Recessive Disease Classification criteria (2015))
Pathogenic
(Nov 2, 2016)
unknownclinical testing

PubMed (2)
[See all records that cite these PMIDs]

mdi-5618_320494_Counsyl Autosomal and X-linked Recessive Disease Classification criteria (2015).pdf

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Molecular diagnosis of Usher syndrome: application of two different next generation sequencing-based procedures.

Licastro D, Mutarelli M, Peluso I, Neveling K, Wieskamp N, Rispoli R, Vozzi D, Athanasakis E, D'Eustacchio A, Pizzo M, D'Amico F, Ziviello C, Simonelli F, Fabretto A, Scheffer H, Gasparini P, Banfi S, Nigro V.

PLoS One. 2012;7(8):e43799. doi: 10.1371/journal.pone.0043799. Epub 2012 Aug 29.

PubMed [citation]
PMID:
22952768
PMCID:
PMC3430670

Two novel disease-causing mutations in the CLRN1 gene in patients with Usher syndrome type 3.

García-García G, Aparisi MJ, Rodrigo R, Sequedo MD, Espinós C, Rosell J, Olea JL, Mendívil MP, Ramos-Arroyo MA, Ayuso C, Jaijo T, Aller E, Millán JM.

Mol Vis. 2012;18:3070-8. Epub 2012 Dec 29.

PubMed [citation]
PMID:
23304067
PMCID:
PMC3538041

Details of each submission

From Counsyl, SCV000487254.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024