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NM_181674.3(PPP2R2B):c.75-562AGC[17] AND not provided

Germline classification:
Likely benign (1 submission)
Last evaluated:
Feb 23, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000513774.11

Allele description [Variation Report for NM_181674.3(PPP2R2B):c.75-562AGC[17]]

NM_181674.3(PPP2R2B):c.75-562AGC[17]

Genes:
LOC108660405:protein phosphatase 2 regulatory subunit Bbeta repeat instability region [Gene]
PPP2R2B:protein phosphatase 2 regulatory subunit Bbeta [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
5q32
Genomic location:
Preferred name:
NM_181674.3(PPP2R2B):c.75-562AGC[17]
HGVS:
  • NC_000005.10:g.146878730TGC[17]
  • NG_011570.3:g.207763AGC[17]
  • NG_051539.1:g.103TGC[17]
  • NM_001271899.1:c.89-177615AGC[17]
  • NM_001271900.2:c.51-562AGC[17]
  • NM_181674.3:c.75-562AGC[17]
  • NM_181676.3:c.79+176908AGC[17]
  • NM_181677.2:c.10+156412AGC[17]
  • NM_181678.2:c.-48-22174AGC[17]
  • NC_000005.9:g.146258293TGC[17]
  • NG_011570.2:g.207714AGC[17]
Links:
dbSNP: rs10591869
NCBI 1000 Genomes Browser:
rs10591869
Molecular consequence:
  • NM_001271899.1:c.89-177615AGC[17] - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001271900.2:c.51-562AGC[17] - intron variant - [Sequence Ontology: SO:0001627]
  • NM_181674.3:c.75-562AGC[17] - intron variant - [Sequence Ontology: SO:0001627]
  • NM_181676.3:c.79+176908AGC[17] - intron variant - [Sequence Ontology: SO:0001627]
  • NM_181677.2:c.10+156412AGC[17] - intron variant - [Sequence Ontology: SO:0001627]
  • NM_181678.2:c.-48-22174AGC[17] - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000609717Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Feb 23, 2017)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Pediatric Genomic Medicine, Children's Mercy Hospital and Clinics, SCV000609717.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot provided0.005266not providednot provided

Last Updated: Oct 13, 2024