NM_022716.4(PRRX1):c.343C>T (p.Arg115Trp) AND Agnathia-otocephaly complex

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Aug 7, 2018
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV000714679.3

Allele description [Variation Report for NM_022716.4(PRRX1):c.343C>T (p.Arg115Trp)]

NM_022716.4(PRRX1):c.343C>T (p.Arg115Trp)

Gene:

PRRX1:paired related homeobox 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1q24.2

Genomic location:

Preferred name:

NM_022716.4(PRRX1):c.343C>T (p.Arg115Trp)

HGVS:

NC_000001.11:g.170719827C>T
NG_031856.2:g.60656C>T
NM_006902.5:c.343C>T
NM_022716.4:c.343C>TMANE SELECT
NP_008833.1:p.Arg115Trp
NP_073207.1:p.Arg115Trp
NC_000001.10:g.170688968C>T
NM_022716.3:c.343C>T

Protein change:

R115W

Links:

dbSNP: rs756620309

NCBI 1000 Genomes Browser:

rs756620309

Molecular consequence:

NM_006902.5:c.343C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_022716.4:c.343C>T - missense variant - [Sequence Ontology: SO:0001583]

Observations:

Condition(s)

Name:: Agnathia-otocephaly complex
Synonyms:: OTOCEPHALY; Dysgnathia complex; Agnathia-holoprosencephaly; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0008740; MedGen: C0265242; Orphanet: 990; OMIM: 202650

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000845399	Genomic Research Center, Shahid Beheshti University of Medical Sciences	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Aug 7, 2018)	inherited	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV000845399

Genomic Research Center, Shahid Beheshti University of Medical Sciences

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Aug 7, 2018)

inherited

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	inherited	yes	1	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Genomic Research Center, Shahid Beheshti University of Medical Sciences, SCV000845399.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	1	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	inherited	yes	not provided	not provided	not provided		1	not provided	not provided	not provided

Last Updated: May 24, 2022

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