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GRCh37/hg19 12q24.31-24.32(chr12:122169403-129084163)x1 AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 27, 2018
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000848395.2

Allele description [Variation Report for GRCh37/hg19 12q24.31-24.32(chr12:122169403-129084163)x1]

GRCh37/hg19 12q24.31-24.32(chr12:122169403-129084163)x1

Genes:
  • OGFOD2:2-oxoglutarate and iron dependent oxygenase domain containing 2 [Gene - HGNC]
  • HPD:4-hydroxyphenylpyruvate dioxygenase [Gene - OMIM - HGNC]
  • ARL6IP4:ADP ribosylation factor like GTPase 6 interacting protein 4 [Gene - OMIM - HGNC]
  • ABCB9:ATP binding cassette subfamily B member 9 [Gene - OMIM - HGNC]
  • ATP6V0A2:ATPase H+ transporting V0 subunit a2 [Gene - OMIM - HGNC]
  • BCL7A:BAF chromatin remodeling complex subunit BCL7A [Gene - OMIM - HGNC]
  • BRI3BP:BRI3 binding protein [Gene - OMIM - HGNC]
  • CLIP1:CAP-Gly domain containing linker protein 1 [Gene - OMIM - HGNC]
  • DDX55:DEAD-box helicase 55 [Gene - HGNC]
  • DHX37:DEAH-box helicase 37 [Gene - OMIM - HGNC]
  • MPHOSPH9:M-phase phosphoprotein 9 [Gene - OMIM - HGNC]
  • MLXIP:MLX interacting protein [Gene - OMIM - HGNC]
  • RILPL1:Rab interacting lysosomal protein like 1 [Gene - OMIM - HGNC]
  • RILPL2:Rab interacting lysosomal protein like 2 [Gene - OMIM - HGNC]
  • SETD1B:SET domain containing 1B, histone lysine methyltransferase [Gene - OMIM - HGNC]
  • B3GNT4:UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [Gene - OMIM - HGNC]
  • VPS33A:VPS33A core subunit of CORVET and HOPS complexes [Gene - OMIM - HGNC]
  • VPS37B:VPS37B subunit of ESCRT-I [Gene - OMIM - HGNC]
  • AACS:acetoacetyl-CoA synthetase [Gene - OMIM - HGNC]
  • RSRC2:arginine and serine rich coiled-coil 2 [Gene - OMIM - HGNC]
  • CFAP251:cilia and flagella associated protein 251 [Gene - OMIM - HGNC]
  • CCDC62:coiled-coil domain containing 62 [Gene - OMIM - HGNC]
  • CCDC92:coiled-coil domain containing 92 [Gene - HGNC]
  • CDK2AP1:cyclin dependent kinase 2 associated protein 1 [Gene - OMIM - HGNC]
  • DENR:density regulated re-initiation and release factor [Gene - OMIM - HGNC]
  • DIABLO:diablo IAP-binding mitochondrial protein [Gene - OMIM - HGNC]
  • DNAH10:dynein axonemal heavy chain 10 [Gene - OMIM - HGNC]
  • EIF2B1:eukaryotic translation initiation factor 2B subunit alpha [Gene - OMIM - HGNC]
  • GTF2H3:general transcription factor IIH subunit 3 [Gene - OMIM - HGNC]
  • HIP1R:huntingtin interacting protein 1 related [Gene - OMIM - HGNC]
  • HCAR1:hydroxycarboxylic acid receptor 1 [Gene - OMIM - HGNC]
  • HCAR2:hydroxycarboxylic acid receptor 2 [Gene - OMIM - HGNC]
  • HCAR3:hydroxycarboxylic acid receptor 3 [Gene - OMIM - HGNC]
  • IL31:interleukin 31 [Gene - OMIM - HGNC]
  • KNTC1:kinetochore associated 1 [Gene - OMIM - HGNC]
  • LRRC43:leucine rich repeat containing 43 [Gene - HGNC]
  • KMT5A:lysine methyltransferase 5A [Gene - OMIM - HGNC]
  • MTRFR:mitochondrial translation release factor in rescue [Gene - OMIM - HGNC]
  • NCOR2:nuclear receptor corepressor 2 [Gene - OMIM - HGNC]
  • PITPNM2:phosphatidylinositol transfer protein membrane associated 2 [Gene - OMIM - HGNC]
  • PSMD9:proteasome 26S subunit, non-ATPase 9 [Gene - OMIM - HGNC]
  • RHOF:ras homolog family member F, filopodia associated [Gene - OMIM - HGNC]
  • RFLNA:refilin A [Gene - OMIM - HGNC]
  • SCARB1:scavenger receptor class B member 1 [Gene - OMIM - HGNC]
  • SNRNP35:small nuclear ribonucleoprotein U11/U12 subunit 35 [Gene - OMIM - HGNC]
  • SBNO1:strawberry notch homolog 1 [Gene - OMIM - HGNC]
  • TCTN2:tectonic family member 2 [Gene - OMIM - HGNC]
  • TMED2:transmembrane p24 trafficking protein 2 [Gene - OMIM - HGNC]
  • TMEM120B:transmembrane protein 120B [Gene - OMIM - HGNC]
  • TMEM132B:transmembrane protein 132B [Gene - HGNC]
  • TMEM132C:transmembrane protein 132C [Gene - HGNC]
  • UBC:ubiquitin C [Gene - OMIM - HGNC]
  • ZCCHC8:zinc finger CCHC-type containing 8 [Gene - OMIM - HGNC]
  • ZNF664:zinc finger protein 664 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
12q24.31-24.32
Genomic location:
Chr12: 122169403 - 129084163 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 12q24.31-24.32(chr12:122169403-129084163)x1
HGVS:
NC_000012.11:g.(?_122169403)_(129084163_?)del

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: CN517202

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000990537Bionano Laboratories
no assertion criteria provided
Pathogenic
(Sep 27, 2018)
unknownclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Bionano Laboratories, SCV000990537.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providedBuccalnot providednot providednot providednot providednot provided

Last Updated: Dec 11, 2022