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NM_015154.3(MESD):c.607_611del (p.Thr203fs) AND Osteogenesis imperfecta, type 20

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jan 31, 2023
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000853613.2

Allele description [Variation Report for NM_015154.3(MESD):c.607_611del (p.Thr203fs)]

NM_015154.3(MESD):c.607_611del (p.Thr203fs)

Gene:
MESD:mesoderm development LRP chaperone [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
15q25.1
Genomic location:
Preferred name:
NM_015154.3(MESD):c.607_611del (p.Thr203fs)
HGVS:
  • NC_000015.10:g.80979316_80979320del
  • NM_015154.3:c.607_611delMANE SELECT
  • NP_055969.1:p.Thr203fs
  • NC_000015.9:g.81271657_81271661del
  • NM_015154.1:c.607_611del
  • NR_126327.2:n.635_639del
Protein change:
T203fs
Links:
OMIM: 607783.0004; dbSNP: rs780491808
NCBI 1000 Genomes Browser:
rs780491808
Molecular consequence:
  • NM_015154.3:c.607_611del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NR_126327.2:n.635_639del - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Osteogenesis imperfecta, type 20
Synonyms:
OSTEOGENESIS IMPERFECTA, TYPE XX
Identifiers:
MONDO: MONDO:0032846; MedGen: C5231439; OMIM: 618644

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000996581OMIM
no assertion criteria provided
Pathogenic
(Jan 31, 2023)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Autosomal-Recessive Mutations in MESD Cause Osteogenesis Imperfecta.

Moosa S, Yamamoto GL, Garbes L, Keupp K, Beleza-Meireles A, Moreno CA, Valadares ER, de Sousa SB, Maia S, Saraiva J, Honjo RS, Kim CA, Cabral de Menezes H, Lausch E, Lorini PV, Lamounier A Jr, Carniero TCB, Giunta C, Rohrbach M, Janner M, Semler O, Beleggia F, et al.

Am J Hum Genet. 2019 Oct 3;105(4):836-843. doi: 10.1016/j.ajhg.2019.08.008. Epub 2019 Sep 26.

PubMed [citation]
PMID:
31564437
PMCID:
PMC6817720

Compound Heterozygous Frameshift Mutations in MESD Cause a Lethal Syndrome Suggestive of Osteogenesis Imperfecta Type XX.

Stürznickel J, Jähn-Rickert K, Zustin J, Hennig F, Delsmann MM, Schoner K, Rehder H, Kreczy A, Schinke T, Amling M, Kornak U, Oheim R.

J Bone Miner Res. 2021 Jun;36(6):1077-1087. doi: 10.1002/jbmr.4277. Epub 2021 Mar 19.

PubMed [citation]
PMID:
33596325

Details of each submission

From OMIM, SCV000996581.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a Brazilian male infant (patient 5) with a progressive deforming type of osteogenesis imperfecta (OI20; 618644), Moosa et al. (2019) identified homozygosity for a 5-bp deletion (c.607_611del, NM_015154.1) in exon 3 of the MESD gene, causing a frameshift predicted to result in a premature termination codon (Thr203AlafsTer26), removing a highly conserved ER-retention domain. His unaffected consanguineous parents were heterozygous for the mutation, which was not a common polymorphism in the Exome Variant Server, 1000 Genomes Project, dbSNP, ExAC, or gnomAD databases. The patient died of respiratory failure at age 7 months.

In 3 stillborn sibs with OI20, who were born to nonconsanguineous parents of German origin, Sturznickel et al. (2021) identified compound heterozygous mutations in the MESD gene: the c.607_611del mutation in exon 3, and a 1-bp deletion (c.265delG; 607783.0005) in exon 2, resulting in a frameshift and premature termination (Ala89HisfsTer8). The mutations were identified by whole-exome sequencing and confirmed by Sanger sequencing. Each parent was heterozygous for one of the mutations. Sequencing of the mRNA from the parents revealed a complete loss of the mRNA harboring the c.265del mutation, while the mRNA with the c.607_611del mutation was readily detected. Sturznickel et al. (2021) suggested that the prenatally lethal phenotype in this family was likely related to complete functional loss of one MESD allele, which could not be compensated by the residual function of the second allele.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 18, 2023