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NM_000410.4(HFE):c.845G>A (p.Cys282Tyr) AND Bronze diabetes

Germline classification:
not provided (1 submission)
Review status:
no classification provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001248830.11

Allele description [Variation Report for NM_000410.4(HFE):c.845G>A (p.Cys282Tyr)]

NM_000410.4(HFE):c.845G>A (p.Cys282Tyr)

Gene:
HFE:homeostatic iron regulator [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p22.2
Genomic location:
Preferred name:
NM_000410.4(HFE):c.845G>A (p.Cys282Tyr)
HGVS:
  • NC_000006.12:g.26092913G>A
  • NG_008720.2:g.10633G>A
  • NM_000410.4:c.845G>AMANE SELECT
  • NM_001300749.3:c.845G>A
  • NM_001384164.1:c.845G>A
  • NM_001406751.1:c.836G>A
  • NM_001406752.1:c.581G>A
  • NM_139003.3:c.527G>A
  • NM_139004.3:c.569G>A
  • NM_139006.3:c.803G>A
  • NM_139007.3:c.581G>A
  • NM_139008.3:c.539G>A
  • NM_139009.3:c.776G>A
  • NM_139010.3:c.305G>A
  • NM_139011.3:c.77-206G>A
  • NP_000401.1:p.Cys282Tyr
  • NP_000401.1:p.Cys282Tyr
  • NP_001287678.1:p.Cys282Tyr
  • NP_001287678.1:p.Cys282Tyr
  • NP_001371093.1:p.Cys282Tyr
  • NP_001393680.1:p.Cys279Tyr
  • NP_001393681.1:p.Cys194Tyr
  • NP_620572.1:p.Cys176Tyr
  • NP_620573.1:p.Cys190Tyr
  • NP_620575.1:p.Cys268Tyr
  • NP_620576.1:p.Cys194Tyr
  • NP_620577.1:p.Cys180Tyr
  • NP_620578.1:p.Cys259Tyr
  • NP_620579.1:p.Cys102Tyr
  • LRG_748t1:c.845G>A
  • LRG_748:g.10633G>A
  • LRG_748p1:p.Cys282Tyr
  • NC_000006.11:g.26093141G>A
  • NG_008720.1:p.Cys282Tyr
  • NM_000410.3:c.845G>A
  • NM_000410.3:c.845G>A
  • NM_000410.4:c.845G>A
  • NM_001300749.2:c.845G>A
  • Q30201:p.Cys282Tyr
  • c.845G>A(C282Y)
Protein change:
C102Y; Cys282Tyr
Links:
Genetic Testing Registry (GTR): GTR000021464; Genetic Testing Registry (GTR): GTR000509340; Genetic Testing Registry (GTR): GTR000558915; UniProtKB: Q30201#VAR_004398; OMIM: 613609.0001; dbSNP: rs1800562
NCBI 1000 Genomes Browser:
rs1800562
Molecular consequence:
  • NM_139011.3:c.77-206G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000410.4:c.845G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001300749.3:c.845G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384164.1:c.845G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406751.1:c.836G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001406752.1:c.581G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139003.3:c.527G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139004.3:c.569G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139006.3:c.803G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139007.3:c.581G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139008.3:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139009.3:c.776G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_139010.3:c.305G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Bronze diabetes
Identifiers:
MedGen: C0018995

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000607202GenomeConnect, ClinGen
no classification provided
not providedunknownphenotyping only

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyes1not providednot provided1not providedphenotyping only
not providedunknownunknown23not providednot provided23not providedphenotyping only

Details of each submission

From GenomeConnect, ClinGen, SCV000607202.5

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedphenotyping onlynot provided
2not provided1not providednot providedphenotyping onlynot provided
3not provided1not providednot providedphenotyping onlynot provided
4not provided1not providednot providedphenotyping onlynot provided
5not provided1not providednot providedphenotyping onlynot provided
6not provided1not providednot providedphenotyping onlynot provided
7not provided1not providednot providedphenotyping onlynot provided
8not provided1not providednot providedphenotyping onlynot provided
9not provided1not providednot providedphenotyping onlynot provided
10not provided1not providednot providedphenotyping onlynot provided
11not provided1not providednot providedphenotyping onlynot provided
12not provided1not providednot providedphenotyping onlynot provided
13not provided1not providednot providedphenotyping onlynot provided
14not provided1not providednot providedphenotyping onlynot provided
15not provided1not providednot providedphenotyping onlynot provided
16not provided1not providednot providedphenotyping onlynot provided
17not provided1not providednot providedphenotyping onlynot provided
18not provided1not providednot providedphenotyping onlynot provided
19not provided1not providednot providedphenotyping onlynot provided
20not provided1not providednot providedphenotyping onlynot provided
21not provided1not providednot providedphenotyping onlynot provided
22not provided1not providednot providedphenotyping onlynot provided
23not provided1not providednot providedphenotyping onlynot provided
24not provided1not providednot providedphenotyping onlynot provided

Description

Variant identified in multiple participants and classified as Pathogenic. GenomeConnect assertions are reported exactly as they appear on the patient-provided report from the testing laboratory. GenomeConnect staff make no attempt to reinterpret the clinical significance of the variant.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknown1not providednot provided1not providednot providednot provided
2unknownunknown1not providednot provided1not providednot providednot provided
3unknownunknown1not providednot provided1not providednot providednot provided
4unknownunknown1not providednot provided1not providednot providednot provided
5unknownunknown1not providednot provided1not providednot providednot provided
6unknownunknown1not providednot provided1not providednot providednot provided
7unknownunknown1not providednot provided1not providednot providednot provided
8unknownunknown1not providednot provided1not providednot providednot provided
9unknownunknown1not providednot provided1not providednot providednot provided
10unknownunknown1not providednot provided1not providednot providednot provided
11unknownunknown1not providednot provided1not providednot providednot provided
12unknownunknown1not providednot provided1not providednot providednot provided
13unknownunknown1not providednot provided1not providednot providednot provided
14unknownunknown1not providednot provided1not providednot providednot provided
15unknownunknown1not providednot provided1not providednot providednot provided
16unknownunknown1not providednot provided1not providednot providednot provided
17unknownunknown1not providednot provided1not providednot providednot provided
18unknownunknown1not providednot provided1not providednot providednot provided
19unknownunknown1not providednot provided1not providednot providednot provided
20unknownunknown1not providednot provided1not providednot providednot provided
21unknownunknown1not providednot provided1not providednot providednot provided
22unknownunknown1not providednot provided1not providednot providednot provided
23unknownunknown1not providednot provided1not providednot providednot provided
24unknownyes1not providednot provided1not providednot providednot provided

Last Updated: Nov 10, 2024