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NM_213599.3(ANO5):c.395A>T (p.Lys132Met) AND Limb-girdle muscular dystrophy

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 29, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001254726.2

Allele description [Variation Report for NM_213599.3(ANO5):c.395A>T (p.Lys132Met)]

NM_213599.3(ANO5):c.395A>T (p.Lys132Met)

Gene:
ANO5:anoctamin 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p14.3
Genomic location:
Preferred name:
NM_213599.3(ANO5):c.395A>T (p.Lys132Met)
HGVS:
  • NC_000011.10:g.22227333A>T
  • NG_015844.1:g.39158A>T
  • NM_001142649.2:c.392A>T
  • NM_213599.3:c.395A>TMANE SELECT
  • NP_001136121.1:p.Lys131Met
  • NP_998764.1:p.Lys132Met
  • LRG_868:g.39158A>T
  • NC_000011.9:g.22248879A>T
  • NC_000011.9:g.22248879A>T
Protein change:
K131M
Links:
dbSNP: rs1852872996
NCBI 1000 Genomes Browser:
rs1852872996
Molecular consequence:
  • NM_001142649.2:c.392A>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_213599.3:c.395A>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Limb-girdle muscular dystrophy (LGMD)
Synonyms:
Muscular Dystrophies, Limb-Girdle
Identifiers:
MONDO: MONDO:0016971; MedGen: C0686353; Orphanet: 263; Human Phenotype Ontology: HP:0006785

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001430804Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard
criteria provided, single submitter

(ACMG Guidelines, 2015)		Uncertain significance
(May 29, 2020) 		germlineresearch

PubMed (1)
[See all records that cite this PMID]

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Broad Center for Mendelian Genomics, Broad Institute of MIT and Harvard, SCV001430804.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)

Description

The p.Lys106Met variant in ANO5 was identified by our study in 1 individual with limb girdle muscular dystrophy, along with another variant of uncertain significance (PMID: 31395899). This variant was absent from large population studies. Computational prediction tools and conservation analyses suggest that this variant may impact the protein, though this information is not predictive enough to determine pathogenicity. In summary, the clinical significance of the p.Lys106Met variant is uncertain. ACMG/AMP Criteria applied: PP3, PM2 (Richards 2015).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024