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NM_016335.6(PRODH):c.1397C>T (p.Thr466Met) AND not provided

Germline classification:
Benign/Likely benign (2 submissions)
Last evaluated:
Jan 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002225259.11

Allele description

NM_016335.6(PRODH):c.1397C>T (p.Thr466Met)

Gene:
PRODH:proline dehydrogenase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q11.21
Genomic location:
Preferred name:
NM_016335.6(PRODH):c.1397C>T (p.Thr466Met)
HGVS:
  • NC_000022.11:g.18918346G>A
  • NG_008226.3:g.23208C>T
  • NM_001195226.2:c.1073C>T
  • NM_016335.6:c.1397C>TMANE SELECT
  • NP_001182155.2:p.Thr358Met
  • NP_057419.5:p.Thr466Met
  • NC_000022.10:g.18905859G>A
  • NG_008226.2:g.23208C>T
  • NM_016335.4:c.1397C>T
Protein change:
T358M; THR466MET
Links:
OMIM: 606810.0009; dbSNP: rs2870984
NCBI 1000 Genomes Browser:
rs2870984
Molecular consequence:
  • NM_001195226.2:c.1073C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_016335.6:c.1397C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
2

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002504213GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Jul 15, 2020)
germlineclinical testing

Citation Link,

SCV004152082CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Benign
(Jan 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes2not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV002504213.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

See Variant Classification Assertion Criteria.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV004152082.9

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided2not providednot providedclinical testingnot provided

Description

PRODH: BS1, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided2not providednot providednot provided

Last Updated: Oct 8, 2024