NM_000302.4(PLOD1):c.77-7T>C AND Ehlers-Danlos syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 1, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002279344.3

Allele description [Variation Report for NM_000302.4(PLOD1):c.77-7T>C]

NM_000302.4(PLOD1):c.77-7T>C

Gene:

PLOD1:procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p36.22

Genomic location:

Preferred name:

NM_000302.4(PLOD1):c.77-7T>C

HGVS:

NC_000001.11:g.11947969T>C
NG_008159.1:g.18281T>C
NM_000302.4:c.77-7T>CMANE SELECT
NM_001316320.2:c.218-7T>C
NC_000001.10:g.12008026T>C
NM_000302.3:c.77-7T>C

Links:

dbSNP: rs371488160

NCBI 1000 Genomes Browser:

rs371488160

Molecular consequence:

NM_000302.4:c.77-7T>C - intron variant - [Sequence Ontology: SO:0001627]
NM_001316320.2:c.218-7T>C - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:: Ehlers-Danlos syndrome (EDS)
Synonyms:: ED syndrome
Identifiers:: MONDO: MONDO:0020066; MedGen: C0013720; OMIM: PS130000

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002566035	Genome Diagnostics Laboratory, The Hospital for Sick Children	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance (Feb 1, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002566035

Genome Diagnostics Laboratory, The Hospital for Sick Children

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance
(Feb 1, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Nothing to display

Details of each submission

From Genome Diagnostics Laboratory, The Hospital for Sick Children, SCV002566035.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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