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NM_001018005.2(TPM1):c.852-5C>T AND Cardiovascular phenotype

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 17, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002414041.3

Allele description [Variation Report for NM_001018005.2(TPM1):c.852-5C>T]

NM_001018005.2(TPM1):c.852-5C>T

Gene:
TPM1:tropomyosin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
15q22.2
Genomic location:
Preferred name:
NM_001018005.2(TPM1):c.852-5C>T
HGVS:
  • NC_000015.10:g.63065891C>T
  • NG_007557.1:g.28253C>T
  • NM_000366.6:c.*45-5C>T
  • NM_001018004.2:c.772+3246C>T
  • NM_001018005.2:c.852-5C>TMANE SELECT
  • NM_001018006.2:c.772+3246C>T
  • NM_001018007.2:c.772+3246C>T
  • NM_001018008.2:c.664+3246C>T
  • NM_001018020.2:c.772+3246C>T
  • NM_001301244.2:c.852-5C>T
  • NM_001301289.2:c.664+3246C>T
  • NM_001330344.2:c.664+3246C>T
  • NM_001330346.2:c.744-5C>T
  • NM_001330351.2:c.664+3246C>T
  • NM_001365776.1:c.772+3246C>T
  • NM_001365777.1:c.773-5C>T
  • NM_001365778.1:c.898+3246C>T
  • NM_001365779.1:c.*45-5C>T
  • NM_001365780.1:c.665-5C>T
  • NM_001365781.2:c.*1745C>T
  • NM_001365782.1:c.*1745C>T
  • LRG_387t1:c.852-5C>T
  • LRG_387:g.28253C>T
  • NC_000015.9:g.63358090C>T
  • NM_001018005.1:c.852-5C>T
  • NM_001018005.2:c.852-5C>T
Links:
dbSNP: rs766724527
NCBI 1000 Genomes Browser:
rs766724527
Molecular consequence:
  • NM_001365781.2:c.*1745C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001365782.1:c.*1745C>T - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_000366.6:c.*45-5C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018004.2:c.772+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018005.2:c.852-5C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018006.2:c.772+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018007.2:c.772+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018008.2:c.664+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001018020.2:c.772+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301244.2:c.852-5C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301289.2:c.664+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330344.2:c.664+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330346.2:c.744-5C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330351.2:c.664+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365776.1:c.772+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365777.1:c.773-5C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365778.1:c.898+3246C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365779.1:c.*45-5C>T - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365780.1:c.665-5C>T - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002675462Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jan 17, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV002675462.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The c.852-5C>T intronic variant results from a C to T substitution 5 nucleotides upstream from coding exon 10 in the TPM1 gene. This nucleotide position is poorly conserved in available vertebrate species. In silico splice site analysis predicts that this alteration will not have any significant effect on splicing. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024