NM_000133.4(F9):c.128G>A (p.Arg43Gln) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: May 25, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV002462253.1

Allele description [Variation Report for NM_000133.4(F9):c.128G>A (p.Arg43Gln)]

NM_000133.4(F9):c.128G>A (p.Arg43Gln)

Gene:

F9:coagulation factor IX [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

Xq27.1

Genomic location:

Preferred name:

NM_000133.4(F9):c.128G>A (p.Arg43Gln)

Other names:

F9, ARG-4GLN; factor IX San Dimas; factor IX Kawachinagano

HGVS:

NC_000023.11:g.139537049G>A
NG_007994.1:g.11314G>A
NM_000133.4:c.128G>AMANE SELECT
NM_001313913.2:c.128G>A
NP_000124.1:p.Arg43Gln
NP_001300842.1:p.Arg43Gln
LRG_556:g.11314G>A
NC_000023.10:g.138619208G>A
NM_000133.3:c.128G>A

Protein change:

R43Q

Links:

OMIM: 300746.0008; dbSNP: rs1275708479

NCBI 1000 Genomes Browser:

rs1275708479

Molecular consequence:

NM_000133.4:c.128G>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001313913.2:c.128G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided; RECLASSIFIED - ADRA2C POLYMORPHISM; RECLASSIFIED - ADRB1 POLYMORPHISM
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV002757495	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Pathogenic (May 25, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV002757495

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Pathogenic
(May 25, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV002757495.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Also known as p.R-4Q, factor IX Kawachinagano (KWC), and factor IX San Dimas; This variant is associated with the following publications: (PMID: 1615486, 1680373, 31577376, 22639855, 32875744, 2757966, 2738071, 3009023, 19699296, 1796396)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Jan 13, 2025

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