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NM_001718.6(BMP6):c.287T>C (p.Leu96Pro) AND Iron overload, susceptibility to

Germline classification:
risk factor (1 submission)
Last evaluated:
Nov 28, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002462812.1

Allele description [Variation Report for NM_001718.6(BMP6):c.287T>C (p.Leu96Pro)]

NM_001718.6(BMP6):c.287T>C (p.Leu96Pro)

Gene:
BMP6:bone morphogenetic protein 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
6p24.3
Genomic location:
Preferred name:
NM_001718.6(BMP6):c.287T>C (p.Leu96Pro)
Other names:
BMP6, LEU96PRO (rs200573175); L96P
HGVS:
  • NC_000006.12:g.7727242T>C
  • NM_001718.6:c.287T>CMANE SELECT
  • NP_001709.1:p.Leu96Pro
  • NC_000006.11:g.7727475T>C
  • NM_001718.5:c.287T>C
Protein change:
LEU96PRO
Links:
OMIM: 112266.0002
Molecular consequence:
  • NM_001718.6:c.287T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Iron overload, susceptibility to (IO)
Identifiers:
MONDO: MONDO:0859316; MedGen: C5703292; OMIM: 620121

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002757771OMIM
no assertion criteria provided
risk factor
(Nov 28, 2022)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Heterozygous Mutations in BMP6 Pro-peptide Lead to Inappropriate Hepcidin Synthesis and Moderate Iron Overload in Humans.

Daher R, Kannengiesser C, Houamel D, Lefebvre T, Bardou-Jacquet E, Ducrot N, de Kerguenec C, Jouanolle AM, Robreau AM, Oudin C, Le Gac G, Moulouel B, Loustaud-Ratti V, Bedossa P, Valla D, Gouya L, Beaumont C, Brissot P, Puy H, Karim Z, Tchernitchko D.

Gastroenterology. 2016 Mar;150(3):672-683.e4. doi: 10.1053/j.gastro.2015.10.049. Epub 2015 Nov 12.

PubMed [citation]
PMID:
26582087

Identification of new BMP6 pro-peptide mutations in patients with iron overload.

Piubelli C, Castagna A, Marchi G, Rizzi M, Busti F, Badar S, Marchetti M, De Gobbi M, Roetto A, Xumerle L, Suku E, Giorgetti A, Delledonne M, Olivieri O, Girelli D.

Am J Hematol. 2017 Jun;92(6):562-568. doi: 10.1002/ajh.24730. Epub 2017 Apr 29.

PubMed [citation]
PMID:
28335084

Details of each submission

From OMIM, SCV002757771.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In 6 members of 3 unrelated French families (families 2, 3, and 4) diagnosed with iron overload (IO; 620121) as adults, Daher et al. (2016) identified a heterozygous c.287T-C transition (c.287T-C, NM_001718) in exon 1 of the BMP6 gene, resulting in a leu96-to-pro (L96P) substitution at a highly conserved residue in the propeptide domain. The mutation, which was found by direct sequencing, segregated with the disorder in the families, although there was evidence of incomplete penetrance. Haplotype analysis did not indicate a founder effect. The L96P variant was present at a low frequency in the Exome Variant Server database (17 of 7,969 alleles). Two additional individuals with the disorder associated with an L96P mutation were subsequently identified in replication cohorts, including 1 who also carried a heterozygous mutation in the HFE gene (H63D; 613609.0002). In vitro studies in OK cells expressing the mutation showed that the mutant protein accumulated primarily in cytosolic aggregates, resulting in decreased secretion. The mutation impaired BMP6-induced activation of the downstream SMAD signaling pathway, with decreased induction of hepcidin (HAMP; 606464) expression. The mutant protein was able to form heterodimers with wildtype BMP6 and acted in a dominant-negative manner.

In a 54-year-old Italian man (patient 01) with IO, Piubelli et al. (2017) identified a heterozygous L96P mutation in the BMP6 gene. The patient also carried a heterozygous mutation in the HFE gene (H63D; 613609.0002). The mutation was found by next-generation sequencing using a panel and confirmed by Sanger sequencing. Functional studies of the variant and studies of patient cells were not performed. Among 111 Italian controls, 2 were found to carry the L96P variant, yielding a frequency of 0.009 in the population. The patient had a severe disease with metabolic syndrome and a history of alcohol consumption, both of which were aggravating factors; he died of cirrhosis shortly after presentation.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024