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NM_000038.6(APC):c.2476T>G (p.Leu826Val) AND multiple conditions

Germline classification:
Likely benign (1 submission)
Last evaluated:
Aug 4, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002492506.8

Allele description [Variation Report for NM_000038.6(APC):c.2476T>G (p.Leu826Val)]

NM_000038.6(APC):c.2476T>G (p.Leu826Val)

Gene:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_000038.6(APC):c.2476T>G (p.Leu826Val)
Other names:
NM_000038.6(APC):c.2476T>G; p.Leu826Val
HGVS:
  • NC_000005.10:g.112838070T>G
  • NG_008481.4:g.150550T>G
  • NM_000038.6:c.2476T>GMANE SELECT
  • NM_001127510.3:c.2476T>G
  • NM_001127511.3:c.2422T>G
  • NM_001354895.2:c.2476T>G
  • NM_001354896.2:c.2530T>G
  • NM_001354897.2:c.2506T>G
  • NM_001354898.2:c.2401T>G
  • NM_001354899.2:c.2392T>G
  • NM_001354900.2:c.2353T>G
  • NM_001354901.2:c.2299T>G
  • NM_001354902.2:c.2203T>G
  • NM_001354903.2:c.2173T>G
  • NM_001354904.2:c.2098T>G
  • NM_001354905.2:c.1996T>G
  • NM_001354906.2:c.1627T>G
  • NP_000029.2:p.Leu826Val
  • NP_001120982.1:p.Leu826Val
  • NP_001120983.2:p.Leu808Val
  • NP_001341824.1:p.Leu826Val
  • NP_001341825.1:p.Leu844Val
  • NP_001341826.1:p.Leu836Val
  • NP_001341827.1:p.Leu801Val
  • NP_001341828.1:p.Leu798Val
  • NP_001341829.1:p.Leu785Val
  • NP_001341830.1:p.Leu767Val
  • NP_001341831.1:p.Leu735Val
  • NP_001341832.1:p.Leu725Val
  • NP_001341833.1:p.Leu700Val
  • NP_001341834.1:p.Leu666Val
  • NP_001341835.1:p.Leu543Val
  • LRG_130:g.150550T>G
  • NC_000005.9:g.112173767T>G
  • NM_000038.4:c.2476T>G
  • NM_000038.5:c.2476T>G
  • p.L826V
Protein change:
L543V
Links:
dbSNP: rs145245264
NCBI 1000 Genomes Browser:
rs145245264
Molecular consequence:
  • NM_000038.6:c.2476T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127510.3:c.2476T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127511.3:c.2422T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354895.2:c.2476T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354896.2:c.2530T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354897.2:c.2506T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354898.2:c.2401T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354899.2:c.2392T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354900.2:c.2353T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354901.2:c.2299T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354902.2:c.2203T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354903.2:c.2173T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354904.2:c.2098T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354905.2:c.1996T>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354906.2:c.1627T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Desmoid disease, hereditary (DESMD)
Synonyms:
Fibromatosis, familial infiltrative
Identifiers:
MedGen: C1851124; Orphanet: 873; OMIM: 135290
Name:
Familial adenomatous polyposis 1 (FAP1)
Synonyms:
POLYPOSIS, ADENOMATOUS INTESTINAL; FAMILIAL ADENOMATOUS POLYPOSIS 1, ATTENUATED; APC-Associated Polyposis Conditions
Identifiers:
MONDO: MONDO:0021056; MedGen: C2713442; OMIM: 175100
Name:
Hepatocellular carcinoma (HCC)
Synonyms:
Primary carcinoma of liver; Hepatoma; LIVER CELL CARCINOMA; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0007256; MedGen: C2239176; OMIM: 114550; Human Phenotype Ontology: HP:0001402
Name:
Gastric cancer
Synonyms:
Stomach cancer; Malignant tumor of stomach
Identifiers:
MONDO: MONDO:0001056; MeSH: D013274; MedGen: C0024623; OMIM: 613659; Human Phenotype Ontology: HP:0012126
Name:
Colorectal cancer
Synonyms:
Colorectal cancer, somatic; Malignant Colorectal Neoplasm
Identifiers:
MONDO: MONDO:0005575; MedGen: C0346629; OMIM: 114500
Name:
Gastric adenocarcinoma and proximal polyposis of the stomach (GAPPS)
Synonyms:
POLYPOSIS, GASTRIC; Polyposis, gastric, Dos Santos and de Magalhaes 1980
Identifiers:
MONDO: MONDO:0017790; MedGen: C4749917; OMIM: 619182

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002797397Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Aug 4, 2021) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002797397.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024