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NM_198253.3(TERT):c.1932G>A (p.Thr644=) AND multiple conditions

Germline classification:
Likely benign (1 submission)
Last evaluated:
Mar 17, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002496837.8

Allele description [Variation Report for NM_198253.3(TERT):c.1932G>A (p.Thr644=)]

NM_198253.3(TERT):c.1932G>A (p.Thr644=)

Gene:
TERT:telomerase reverse transcriptase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5p15.33
Genomic location:
Preferred name:
NM_198253.3(TERT):c.1932G>A (p.Thr644=)
HGVS:
  • NC_000005.10:g.1280176C>T
  • NG_009265.1:g.19872G>A
  • NM_001193376.3:c.1932G>A
  • NM_198253.3:c.1932G>AMANE SELECT
  • NP_001180305.1:p.Thr644=
  • NP_937983.2:p.Thr644=
  • NP_937983.2:p.Thr644=
  • LRG_343t1:c.1932G>A
  • LRG_343:g.19872G>A
  • LRG_343p1:p.Thr644=
  • NC_000005.9:g.1280291C>T
  • NM_198253.2:c.1932G>A
  • NR_149162.3:n.2011G>A
  • NR_149163.3:n.2011G>A
Links:
dbSNP: rs148582238
NCBI 1000 Genomes Browser:
rs148582238
Molecular consequence:
  • NR_149162.3:n.2011G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_149163.3:n.2011G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001193376.3:c.1932G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_198253.3:c.1932G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:
Interstitial lung disease 2 (ILD2)
Synonyms:
Fibrosing alveolitis, cryptogenic; Familial idiopathic pulmonary fibrosis; Fibrocystic pulmonary dysplasia
Identifiers:
MONDO: MONDO:0800029; MedGen: C5561926; Orphanet: 2032; Orphanet: 79126; OMIM: 178500
Name:
Aplastic anemia
Identifiers:
MONDO: MONDO:0015909; MedGen: C0002874; Orphanet: 88; OMIM: 609135; Human Phenotype Ontology: HP:0001915
Name:
Dyskeratosis congenita, autosomal dominant 1 (DKCA1)
Synonyms:
Dyskeratosis congenita autosomal dominant; Dyskeratosis congenita Scoggins type
Identifiers:
MONDO: MONDO:0007485; MedGen: C4551974; Orphanet: 1775; OMIM: 127550
Name:
Acute myeloid leukemia (AML)
Synonyms:
Acute myeloid leukemia, adult; AML adult; Acute myelogenous leukemia; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0018874; MeSH: D015470; MedGen: C0023467; Orphanet: 519; OMIM: 601626; Human Phenotype Ontology: HP:0004808
Name:
Dyskeratosis congenita, autosomal dominant 2
Identifiers:
MONDO: MONDO:0013521; MedGen: C3151443; OMIM: 613989
Name:
Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 1
Synonyms:
PULMONARY FIBROSIS AND/OR BONE MARROW FAILURE SYNDROME, TELOMERE-RELATED, 1
Identifiers:
MONDO: MONDO:0013878; MedGen: C3553617; Orphanet: 88; OMIM: 614742
Name:
Melanoma, cutaneous malignant, susceptibility to, 9
Synonyms:
Cutaneous malignant melanoma 9
Identifiers:
MONDO: MONDO:0014056; MedGen: C3554574; Orphanet: 618; OMIM: 615134

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002808856Fulgent Genetics, Fulgent Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely benign
(Mar 17, 2022) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Fulgent Genetics, Fulgent Genetics, SCV002808856.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 29, 2024