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NM_004004.6(GJB2):c.109G>A (p.Val37Ile) AND Inborn genetic diseases

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Feb 10, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002514109.10

Allele description [Variation Report for NM_004004.6(GJB2):c.109G>A (p.Val37Ile)]

NM_004004.6(GJB2):c.109G>A (p.Val37Ile)

Gene:
GJB2:gap junction protein beta 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q12.11
Genomic location:
Preferred name:
NM_004004.6(GJB2):c.109G>A (p.Val37Ile)
Other names:
NM_004004.5(GJB2):c.109G>A
HGVS:
  • NC_000013.11:g.20189473C>T
  • NG_008358.1:g.8503G>A
  • NM_004004.6:c.109G>AMANE SELECT
  • NP_003995.2:p.Val37Ile
  • NP_003995.2:p.Val37Ile
  • LRG_1350t1:c.109G>A
  • LRG_1350:g.8503G>A
  • LRG_1350p1:p.Val37Ile
  • NC_000013.10:g.20763612C>T
  • NM_004004.5:c.109G>A
  • P29033:p.Val37Ile
  • c.109G>A
  • c.109G>A (p.Val37Ile)
  • p.VAL37ILE
Protein change:
V37I; VAL37ILE
Links:
UniProtKB: P29033#VAR_002139; OMIM: 121011.0023; dbSNP: rs72474224
NCBI 1000 Genomes Browser:
rs72474224
Molecular consequence:
  • NM_004004.6:c.109G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003736661Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Pathogenic
(Feb 10, 2020)
germlineclinical testing

PubMed (7)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Loss-of-function and residual channel activity of connexin26 mutations associated with non-syndromic deafness.

Bruzzone R, Veronesi V, Gomès D, Bicego M, Duval N, Marlin S, Petit C, D'Andrea P, White TW.

FEBS Lett. 2003 Jan 2;533(1-3):79-88.

PubMed [citation]
PMID:
12505163

GJB2 mutations and degree of hearing loss: a multicenter study.

Snoeckx RL, Huygen PL, Feldmann D, Marlin S, Denoyelle F, Waligora J, Mueller-Malesinska M, Pollak A, Ploski R, Murgia A, Orzan E, Castorina P, Ambrosetti U, Nowakowska-Szyrwinska E, Bal J, Wiszniewski W, Janecke AR, Nekahm-Heis D, Seeman P, Bendova O, Kenna MA, Frangulov A, et al.

Am J Hum Genet. 2005 Dec;77(6):945-57. Epub 2005 Oct 19.

PubMed [citation]
PMID:
16380907
PMCID:
PMC1285178
See all PubMed Citations (7)

Details of each submission

From Ambry Genetics, SCV003736661.3

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (7)

Description

The c.109G>A (p.V37I) alteration is located in coding exon 1 of the GJB2 gene. This alteration results from a G to A substitution at nucleotide position 109, causing the valine (V) at amino acid position 37 to be replaced by an isoleucine (I)._x000D_ _x000D_ update for allelic disease - AD is too common Based on data from gnomAD, the A allele has an overall frequency of 0.756% (2132/282164) total alleles studied. The highest observed frequency was 8.345% (1665/19952) of East Asian alleles. This alteration has been more commonly reported in individuals of Asian ancestry (both affected and controls) (Huculak, 2006; Tang, 2006; Li, 2012). Although rare, homozygous and compound heterozygous observations have been identified in individuals with normal hearing; however presentation is typically associated with childhood onset bilateral sensorineural hearing loss (Shen, 2019; Tang, 2006). A more recent study has reported the p.V37I variant as pathogenic with variable expressivity and incomplete penetrance with progressive hearing loss over time when detected in homozygous or compound heterozygous forms (Chen, 2020). This variant has been detected as a homozygous finding in multiple families with sensorineural hearing loss (Ambry internal data). This amino acid position is highly conserved in available vertebrate species. Functional studies demonstrate an inability to induce formation of homotypic gap-junction channels, leading to a complete loss of channel activity (Bruzzone, 2003). However, large cohort studies have reported that hearing loss is typically in the mild to moderate range suggesting that the phenotypic presentation may not reflect the functional data (Snoeckx, 2005; Huculak, 2006). The in silico prediction for this alteration is inconclusive. Based on the available evidence, this alteration is classified as pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024